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Bug#968716: marked as done (ITP: shasta -- nanopore whole genome assembly (binaries and scripts))

Your message dated Mon, 19 Oct 2020 22:10:11 +0000
with message-id <E1kUdM3-0005Aj-BO@fasolo.debian.org>
and subject line Bug#968716: fixed in shasta 0.5.1-1
has caused the Debian Bug report #968716,
regarding ITP: shasta -- nanopore whole genome assembly (binaries and scripts)
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
968716: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=968716
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: shasta -- nanopore whole genome assembly (binaries and scripts)
Package: wnpp
Owner: Shayan Doust <hello@shayandoust.me>
Severity: wishlist

* Package name    : shasta
  Version         : 0.5.1
  Upstream Author : Chan Zuckerberg Initiative
* URL             : https://github.com/chanzuckerberg/shasta
* License         : Expat
  Programming Lang: C++
  Description     : nanopore whole genome assembly (binaries and scripts)
 De novo assembly from Oxford Nanopore reads. The goal of the Shasta long
 read assembler is to rapidly produce accurate assembled sequence using
 as input DNA reads generated by Oxford Nanopore flow cells.
 .
 Computational methods used by the Shasta assembler include:
 .
  * Using a run-length representation of the read sequence. This makes
    the assembly process more resilient to errors in homopolymer
    repeat counts, which are the most common type of errors in Oxford
    Nanopore reads.
 .
  * Using in some phases of the computation a representation of the read
    sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
 .
 Shasta assembly quality is comparable or better than assembly quality
 achieved by other long read assemblers.
 .
 This package contains the executable binaries (tools) and
 accommodating scripts.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/shasta

--- End Message ---
--- Begin Message --- 
Source: shasta
Source-Version: 0.5.1-1
Done: Shayan Doust <hello@shayandoust.me>

We believe that the bug you reported is fixed in the latest version of
shasta, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 968716@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Shayan Doust <hello@shayandoust.me> (supplier of updated shasta package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 20 Aug 2020 16:47:28 +0000
Source: shasta
Binary: python3-shasta python3-shasta-dbgsym python3-shasta-doc shasta shasta-dbgsym
Architecture: source amd64 all
Version: 0.5.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Shayan Doust <hello@shayandoust.me>
Description:
 python3-shasta - nanopore whole genome assembly (dynamic library)
 python3-shasta-doc - nanopore whole genome assembly (documentation)
 shasta     - nanopore whole genome assembly (binaries and scripts)
Closes: 968716
Changes:
 shasta (0.5.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #968716)
Checksums-Sha1:
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 7a3f9cd0bf01b735a1a1b647972e17fc0c047b12 3460446 shasta_0.5.1.orig.tar.gz
 94303d6e4d44434c8cdeebcc085adfd5f616cdfb 8336 shasta_0.5.1-1.debian.tar.xz
 fd01ee109efa9d3db9f1cf8a3d1c30d2ad043476 97628 python3-shasta-dbgsym_0.5.1-1_amd64.deb
 e4b572c483ef8e499aad4f112e1a27c3f0652344 18612 python3-shasta-doc_0.5.1-1_all.deb
 057b1b744e8a22e4d7d738bb77922d8309d61bc4 1510316 python3-shasta_0.5.1-1_amd64.deb
 6e604e9965a8c353432dad41a14226bb8986c8f1 16484 shasta-dbgsym_0.5.1-1_amd64.deb
 74a0ba26bd968126a81e5ee3573efe61815b1aed 14948 shasta_0.5.1-1_amd64.buildinfo
 32f318fb858c5b039452dc888a5936b8e0ed432c 564824 shasta_0.5.1-1_amd64.deb
Checksums-Sha256:
 a1d15108950f49034be0acbed13f8db8f5371641048302be10fa5d9f3206bdcb 2248 shasta_0.5.1-1.dsc
 867c294c75c08ee115be3230d7b5dc2816c93e5f30dfd70d3b9e7397b4b142ef 3460446 shasta_0.5.1.orig.tar.gz
 77ead9df3a60cc793137d0171afb9eb853be6cff6df5cd42d67e884dfa0b9bc4 8336 shasta_0.5.1-1.debian.tar.xz
 161435d969be57938a642ed6bd12bb68c3f2110e9098399dc1a9088b117b55f7 97628 python3-shasta-dbgsym_0.5.1-1_amd64.deb
 f967adffdff44e16a96b3c255e124d9b0fd0a09df941586b8f3741286ff3377a 18612 python3-shasta-doc_0.5.1-1_all.deb
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 93b3383b3c6474761b23e5ac9fab2097dedee186bc7a21ead944232c7fa18560 16484 shasta-dbgsym_0.5.1-1_amd64.deb
 adc532818dc0f5174dccd7b421c893808caf10c17371479dd22cfd3883b1a64d 14948 shasta_0.5.1-1_amd64.buildinfo
 f1e675cf6bdb82fcf084e5e4cee873622346d7a59f3548dc92c4490ab627a113 564824 shasta_0.5.1-1_amd64.deb
Files:
 2d37528f6f51833c1fd30df945f9f025 2248 science optional shasta_0.5.1-1.dsc
 67e5239f7773ee26a4429044ad70aeb1 3460446 science optional shasta_0.5.1.orig.tar.gz
 751b9d115e72dfc5629ca998e485a878 8336 science optional shasta_0.5.1-1.debian.tar.xz
 aaaaf352c9b3cc294d8104fec8872542 97628 debug optional python3-shasta-dbgsym_0.5.1-1_amd64.deb
 0e1fbb80b47c0eee3897fa9139c7ffa3 18612 doc optional python3-shasta-doc_0.5.1-1_all.deb
 ce7b30d189493a0e4063b057e8636f57 1510316 python optional python3-shasta_0.5.1-1_amd64.deb
 138bc04ca34efa063bde770a085722cd 16484 debug optional shasta-dbgsym_0.5.1-1_amd64.deb
 b259ec562d590864060d251c59f480c7 14948 science optional shasta_0.5.1-1_amd64.buildinfo
 5fbe10a5495b93ec6527fa383157bb7b 564824 science optional shasta_0.5.1-1_amd64.deb

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