Bug#955548: marked as done (ITP: wtdbg2 -- de novo sequence assembler for long noisy reads)
Your message dated Sun, 05 Apr 2020 18:00:08 +0000
with message-id <E1jL9Z2-000EPw-Se@fasolo.debian.org>
and subject line Bug#955548: fixed in wtdbg2 2.5-1
has caused the Debian Bug report #955548,
regarding ITP: wtdbg2 -- de novo sequence assembler for long noisy reads
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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955548: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=955548
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: wtdbg2 -- de novo sequence assembler for long noisy reads
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist
* Package name : wtdbg2
Version : 2.5
Upstream Author : Jue Ruan <ruanjue@gmail.com>
* URL : https://github.com/ruanjue/wtdbg2
* License : GPL-3+
Programming Lang: C
Description : de novo sequence assembler for long noisy reads
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by
PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads
without error correction and then builds the consensus from intermediate
assembly output. Wtdbg2 is able to assemble the human and even the 32Gb
Axolotl genome at a speed tens of times faster than CANU and FALCON
while producing contigs of comparable base accuracy.
.
During assembly, wtdbg2 chops reads into 1024bp segments, merges similar
segments into a vertex and connects vertices based on the segment
adjacency on reads. The resulting graph is called fuzzy Bruijn graph
(FBG). It is akin to De Bruijn graph but permits mismatches/gaps and
keeps read paths when collapsing k-mers. The use of FBG distinguishes
wtdbg2 from the majority of long-read assemblers.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/wtdbg2
--- End Message ---
--- Begin Message ---
Source: wtdbg2
Source-Version: 2.5-1
Done: Andreas Tille <tille@debian.org>
We believe that the bug you reported is fixed in the latest version of
wtdbg2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 955548@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated wtdbg2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 02 Apr 2020 13:39:43 +0200
Source: wtdbg2
Binary: wtdbg2 wtdbg2-dbgsym
Architecture: source amd64
Version: 2.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
wtdbg2 - de novo sequence assembler for long noisy reads
Closes: 955548
Changes:
wtdbg2 (2.5-1) unstable; urgency=medium
.
* Initial release (Closes: #955548)
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