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Bug#858947: marked as done (RFP: plink2 -- whole-genome association analysis toolset)

Your message dated Sun, 19 Jan 2020 22:00:13 +0000
with message-id <E1itIc9-00009A-Ir@fasolo.debian.org>
and subject line Bug#858947: fixed in plink2 2.00~a2-191128+dfsg-1
has caused the Debian Bug report #858947,
regarding RFP: plink2 -- whole-genome association analysis toolset
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)


-- 
858947: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=858947
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Package name: plink2
URL: https://www.cog-genomics.org/plink/2.0/
License: GPL3+
Description: whole-genome association analysis toolset
 plink expects as input the data from SNP (single nucleotide polymorphism)
 chips of many individuals and their phenotypical description of a disease.
 It finds associations of single or pairs of DNA variations with a phenotype
 and can retrieve SNP annotation from an online source.
 .
 SNPs can evaluated individually or as pairs for their association with the
 disease phenotypes. The joint investigation of copy number variations is
 supported. A variety of statistical tests have been implemented.
 .
 plink2 is a comprehensive update of plink 1.07 and plink 1.9 with new
algorithms
 and new methods, faster and less memory consumer than the first plink.


Plink 2 breaks many things against plink 1.07 and plink 1.9 so it will
need a new
separate package. Plink 2 is currently in alpha stage but it should be great to
already have a package.
This package will be maintained by the Debian Med team at:
https://anonscm.debian.org/git/debian-med/plink2.git

--- End Message ---
--- Begin Message --- 
Source: plink2
Source-Version: 2.00~a2-191128+dfsg-1

We believe that the bug you reported is fixed in the latest version of
plink2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 858947@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Dylan Aïssi <daissi@debian.org> (supplier of updated plink2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 06 Dec 2019 22:28:40 +0100
Source: plink2
Binary: plink2 plink2-dbgsym
Architecture: source amd64
Version: 2.00~a2-191128+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
 plink2     - whole-genome association analysis toolset
Closes: 858947
Changes:
 plink2 (2.00~a2-191128+dfsg-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #858947)
Checksums-Sha1:
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 8de1abb8473eb0522c55981a2a27bc49e9b94766 18076 plink2_2.00~a2-191128+dfsg-1.debian.tar.xz
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 b172f10719c6c77cc799a26c3f1b1029256f61885520abda28512c69c0883b59 5983 plink2_2.00~a2-191128+dfsg-1_amd64.buildinfo
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Files:
 74ae6e8ab35a4cc5e020ff81e12c5d88 2180 science optional plink2_2.00~a2-191128+dfsg-1.dsc
 89c7a6eefee2364381bae06653e5653f 832144 science optional plink2_2.00~a2-191128+dfsg.orig.tar.xz
 12875187ceddc4a0778556ebf295229a 18076 science optional plink2_2.00~a2-191128+dfsg-1.debian.tar.xz
 3ef518754e071e75a884c1de24d69a17 4519516 debug optional plink2-dbgsym_2.00~a2-191128+dfsg-1_amd64.deb
 ed29506db4965a2d71ddd3bf17b6f21c 5983 science optional plink2_2.00~a2-191128+dfsg-1_amd64.buildinfo
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--- End Message ---
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