Bug#944789: ITP: resfinder -- identifies acquired antimicrobial resistance genes
Package: wnpp
Severity: wishlist
Subject: ITP: resfinder -- identifies acquired antimicrobial resistance genes
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist
* Package name : resfinder
Version : 3.2
Upstream Author : Ole Lund, Technical University of Denmark
* URL : https://bitbucket.org/genomicepidemiology/resfinder
* License : Apache-2.0
Programming Lang: Python
Description : identifies acquired antimicrobial resistance genes
ResFinder identifies acquired antimicrobial resistance genes in total or
partial sequenced isolates of bacteria.
.
ResFinder that uses BLAST for identification of acquired antimicrobial
resistance genes in whole-genome data. As input, the method can use both
pre-assembled, complete or partial genomes, and short sequence reads
from four different sequencing platforms. The method was evaluated on
1862 GenBank files containing 1411 different resistance genes, as well
as on 23 de-novo-sequenced isolates.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/resfinder
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