Bug#944385: ITP: skewer --
Package: wnpp
Severity: wishlist
Subject: ITP: skewer --
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist
* Package name : skewer
Version : 0.2.2
Upstream Author : by Hongshan Jiang <hongshan.jiang@gmail.com>
* URL : https://github.com/relipmoc/skewer
* License : MIT
Programming Lang: C
Description :
skewer implements the bit-masked k-difference matching algorithm
dedicated to the task of adapter trimming and it is specially designed
for processing next-generation sequencing (NGS) paired-end sequences.
.
Features
.
* Detection and removal of adapter sequences
* Insertion and deletion allowed in pattern matching
* Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
* Demultiplexing of barcoded sequencing runs
* Multi-threading support
* Trimming based on phred quality scores
* IUPAC characters for barcodes and adapters
* Compressed input and output support
Remark: This package is maintained by Steffen Moeller at
https://salsa.debian.org/med-team/skewer
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