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Bug#925417: marked as done (ITP: kallisto -- near-optimal RNA-Seq quantification)

Your message dated Mon, 05 Aug 2019 10:00:11 +0000
with message-id <E1huZml-000328-Ev@fasolo.debian.org>
and subject line Bug#925417: fixed in kallisto 0.45.1+dfsg-1
has caused the Debian Bug report #925417,
regarding ITP: kallisto -- near-optimal RNA-Seq quantification
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
925417: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925417
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: kallisto -- near-optimal RNA-Seq quantification
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist

* Package name    : kallisto
  Version         : 0.45.1
  Upstream Author : Nicolas Bray, Harold Pimentel, Páll Melsted and Lior Pachter
* URL             : https://pachterlab.github.io/kallisto
* License         : BSD-2-Clause
  Programming Lang: C
  Description     : near-optimal RNA-Seq quantification
 Kallisto is a program for quantifying abundances of transcripts from
 RNA-Seq data, or more generally of target sequences using high-throughput
 sequencing reads. It is based on the novel idea of pseudoalignment for
 rapidly determining the compatibility of reads with targets, without the
 need for alignment. On benchmarks with standard RNA-Seq data, kallisto
 can quantify 30 million human reads in less than 3 minutes on a Mac
 desktop computer using only the read sequences and a transcriptome index
 that itself takes less than 10 minutes to build. Pseudoalignment of
 reads preserves the key information needed for quantification, and
 kallisto is therefore not only fast, but also as accurate than existing
 quantification tools. In fact, because the pseudoalignment procedure is
 robust to errors in the reads, in many benchmarks kallisto significantly
 outperforms existing tools.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/kallisto

--- End Message ---
--- Begin Message --- 
Source: kallisto
Source-Version: 0.45.1+dfsg-1

We believe that the bug you reported is fixed in the latest version of
kallisto, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 925417@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated kallisto package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sun, 24 Mar 2019 21:53:40 +0100
Source: kallisto
Binary: kallisto kallisto-examples
Architecture: source amd64 all
Version: 0.45.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 kallisto   - near-optimal RNA-Seq quantification
 kallisto-examples - near-optimal RNA-Seq quantification (example data)
Closes: 925417
Changes:
 kallisto (0.45.1+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #925417)
Checksums-Sha1:
 09aab4cdf9977c6de5d522a3fd4aba7540b0eca9 2103 kallisto_0.45.1+dfsg-1.dsc
 3375f72a372298b38eed0231722a35d3339d1ea6 844948 kallisto_0.45.1+dfsg.orig.tar.xz
 f9031e9daa6317d4e63899979142e0185a4f1fe1 5040 kallisto_0.45.1+dfsg-1.debian.tar.xz
 40053a79392f5c58579c29884ad9289024e3eb72 3694760 kallisto-dbgsym_0.45.1+dfsg-1_amd64.deb
 5b8bc6f16f7ab532659a463797e432d3bf5df5b8 437886 kallisto-examples_0.45.1+dfsg-1_all.deb
 9cf87c4deb3925a4098782044db5df24a462744a 7581 kallisto_0.45.1+dfsg-1_amd64.buildinfo
 7edb3b9a3a4f682f5f4b42c8666a9c8bb65d8966 233586 kallisto_0.45.1+dfsg-1_amd64.deb
Checksums-Sha256:
 8a06da5a4bec6f1e241ecf2c12d572ef71e7866eaabdebb2299f91aefabb072e 2103 kallisto_0.45.1+dfsg-1.dsc
 576dd80bc67e22cc4cedbc06333c1277b1bc483afae5a5fe75827949cb90df1d 844948 kallisto_0.45.1+dfsg.orig.tar.xz
 ff21a99c3a478cd27b0aa535cae2c54485f24481e15579b465986a82e6931b6b 5040 kallisto_0.45.1+dfsg-1.debian.tar.xz
 68d1c735d38725b2ad7ff5182b8dd8076a3aebf1e6880a0d9b2afca8a772bfb0 3694760 kallisto-dbgsym_0.45.1+dfsg-1_amd64.deb
 ddec0d753bcc9b93e7886958352d9c3591aa488fe4588dffa3418bf0d6d66fd4 437886 kallisto-examples_0.45.1+dfsg-1_all.deb
 00589aebb80e44a922563d207dc473c98f86c984531aa2817031033102ff3da7 7581 kallisto_0.45.1+dfsg-1_amd64.buildinfo
 2c029515c58f7f8b56d4adfaf8415c889b644ad31579bff9db4564b3ef4f3925 233586 kallisto_0.45.1+dfsg-1_amd64.deb
Files:
 a01103b193d4b150377b4ec577b3cd17 2103 science optional kallisto_0.45.1+dfsg-1.dsc
 8a58b5b2ba2bb806f543d707fcba6636 844948 science optional kallisto_0.45.1+dfsg.orig.tar.xz
 61687a96f17383108d64da35224913e8 5040 science optional kallisto_0.45.1+dfsg-1.debian.tar.xz
 fe9d19683fd1c2f3449f225c08868be5 3694760 debug optional kallisto-dbgsym_0.45.1+dfsg-1_amd64.deb
 ee889574a6709091b52155f2d335c906 437886 science optional kallisto-examples_0.45.1+dfsg-1_all.deb
 43cfccd5d98fb9aa747bd947a35cc0bf 7581 science optional kallisto_0.45.1+dfsg-1_amd64.buildinfo
 bd357cae63fdb33a60d788c44f82e803 233586 science optional kallisto_0.45.1+dfsg-1_amd64.deb

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--- End Message ---
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