[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#926978: marked as done (ITP: biobambam2 -- tools for early stage alignment file processing)

Your message dated Sun, 04 Aug 2019 19:00:12 +0000
with message-id <E1huLjo-000Bqj-6I@fasolo.debian.org>
and subject line Bug#926978: fixed in biobambam2 2.0.95-1
has caused the Debian Bug report #926978,
regarding ITP: biobambam2 -- tools for early stage alignment file processing
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
926978: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=926978
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: biobambam2 -- tools for early stage alignment file processing
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist

* Package name    : biobambam2
  Version         : 2.0.95
  Upstream Author : German Tischler <tischler@mpi-cbg.de>
* URL             : https://gitlab.com/german.tischler/biobambam2
* License         : GPL-3+
  Programming Lang: C++
  Description     : tools for early stage alignment file processing
 This package contains some tools for processing BAM files including
 .
   bamsormadup:  parallel sorting and duplicate marking
   bamcollate2:  reads BAM and writes BAM reordered such that alignment
                 or collated by query name
   bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                 marked using the BAM flags field
   bammaskflags: reads BAM and writes BAM while masking (removing) bits
                 from the flags column
   bamrecompress: reads BAM and writes BAM with a defined compression
                  setting. This tool is capable of multi-threading.
   bamsort:       reads BAM and writes BAM resorted by coordinates or
                  query name
   bamtofastq:    reads BAM and writes FastQ; output can be collated
                  or uncollated by query name

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/biobambam2

--- End Message ---
--- Begin Message --- 
Source: biobambam2
Source-Version: 2.0.95-1

We believe that the bug you reported is fixed in the latest version of
biobambam2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 926978@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated biobambam2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 13 Apr 2019 07:15:32 +0200
Source: biobambam2
Binary: biobambam2
Architecture: source amd64
Version: 2.0.95-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 biobambam2 - tools for early stage alignment file processing
Closes: 926978
Changes:
 biobambam2 (2.0.95-1) unstable; urgency=medium
 .
   * Initial release (Closes: #926978)
Checksums-Sha1:
 574a2a11a683b54f7553abd0af1d249073630eb2 2000 biobambam2_2.0.95-1.dsc
 5423b9d1b59e14cd21dacc50e8567f1e39ceaab5 829092 biobambam2_2.0.95.orig.tar.bz2
 ddf01e652b03b0375152f0847c64db9bdbd834e7 2728 biobambam2_2.0.95-1.debian.tar.xz
 87e608a94ce3e473b4b4728f7e164013f45a23ed 153245004 biobambam2-dbgsym_2.0.95-1_amd64.deb
 9dc536ccb5d9f2ce5f497fceec2eb9b15918673c 5822 biobambam2_2.0.95-1_amd64.buildinfo
 54feca0b2cf60d91a382977eefc2dccc295f6bce 5867432 biobambam2_2.0.95-1_amd64.deb
Checksums-Sha256:
 ba907720ef0d7e64026e3df46a5848aabdb2df5d33e0952963351c574f49ebee 2000 biobambam2_2.0.95-1.dsc
 7a4c83eaebd60e01bc13f665e989c4f2ba1e54fcf4e3383ba9f21263b4756d1d 829092 biobambam2_2.0.95.orig.tar.bz2
 c9698a5d049a95f78b08683db4f0abd30f729adbb322f10a911819b5e6061b1c 2728 biobambam2_2.0.95-1.debian.tar.xz
 5f17de9a4970d87e07e251627e63aea4fba7168f08e5732af2a96e3d5467f83e 153245004 biobambam2-dbgsym_2.0.95-1_amd64.deb
 ee64f40fe70bd922e4089e30caf9fdf2e93e3e2f63d9327ec5605882c666061c 5822 biobambam2_2.0.95-1_amd64.buildinfo
 b5e9023b6339179ab87c1be4c965c36923d7f2db78cdca1c8746294f1d4edad8 5867432 biobambam2_2.0.95-1_amd64.deb
Files:
 ee22c1dbf409b7b3798085dbf2fed54e 2000 science optional biobambam2_2.0.95-1.dsc
 e2b4e5056678fbd087738b8d913556d3 829092 science optional biobambam2_2.0.95.orig.tar.bz2
 a3cb482cd13b8ab7681d9cc69167a881 2728 science optional biobambam2_2.0.95-1.debian.tar.xz
 13385076459f18b9d834290cbc5eec1c 153245004 debug optional biobambam2-dbgsym_2.0.95-1_amd64.deb
 dc4be36965f2d693918a9b9ecbf8b106 5822 science optional biobambam2_2.0.95-1_amd64.buildinfo
 374390dd3b48607a70f84635b08e1838 5867432 science optional biobambam2_2.0.95-1_amd64.deb

-----BEGIN PGP SIGNATURE-----
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=3J/s
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: