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Bug#892522: marked as done (ITP: r-bioc-bitseq -- transcript expression inference and analysis for RNA-seq data)

Your message dated Sat, 12 May 2018 22:00:13 +0000
with message-id <E1fHcYn-0008s2-C6@fasolo.debian.org>
and subject line Bug#892522: fixed in r-bioc-bitseq 1.24.0+dfsg-1
has caused the Debian Bug report #892522,
regarding ITP: r-bioc-bitseq -- transcript expression inference and analysis for RNA-seq data
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
892522: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=892522
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : r-bioc-bitseq
  Version         : 1.22.0
  Upstream Author : Peter Glaus, Antti Honkela and Magnus Rattray
* URL             : https://bioconductor.org/packages/BitSeq/
* License         : Artistic-2.0
  Programming Lang: GNU R
  Description     : transcript expression inference and analysis for RNA-seq data
 The BitSeq package is targeted for transcript expression
 analysis and differential expression analysis of RNA-seq data
 in two stage process. In the first stage it uses Bayesian
 inference methodology to infer expression of individual
 transcripts from individual RNA-seq experiments. The second
 stage of BitSeq embraces the differential expression analysis
 of transcript expression. Providing expression estimates from
 replicates of multiple conditions, Log-Normal model of the
 estimates is used for inferring the condition mean transcript
 expression and ranking the transcripts based on the likelihood
 of differential expression.


Remark: This package is needed in BioLinux and thus a sensible target for
the Debian Med team.  The actual packaging will be done by the r-pkg team
at
    https://salsa.debian.org/r-pkg-team/r-bioc-bitseq

--- End Message ---
--- Begin Message --- 
Source: r-bioc-bitseq
Source-Version: 1.24.0+dfsg-1

We believe that the bug you reported is fixed in the latest version of
r-bioc-bitseq, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 892522@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated r-bioc-bitseq package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


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Hash: SHA256

Format: 1.8
Date: Sat, 12 May 2018 21:41:33 +0200
Source: r-bioc-bitseq
Binary: r-bioc-bitseq
Architecture: source amd64
Version: 1.24.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-bitseq - transcript expression inference and analysis for RNA-seq data
Closes: 892522
Changes:
 r-bioc-bitseq (1.24.0+dfsg-1) unstable; urgency=medium
 .
   * Initial release (closes: #892522)
Checksums-Sha1:
 7a486f65a3a62d81c704f3642eccb931c5925cf0 2156 r-bioc-bitseq_1.24.0+dfsg-1.dsc
 195876e7e75ac0e7b881a0b22b984b5ee5fc1000 749532 r-bioc-bitseq_1.24.0+dfsg.orig.tar.xz
 9ea0b8e7110c80a829b32a97ec3682251a6256b0 5492 r-bioc-bitseq_1.24.0+dfsg-1.debian.tar.xz
 bdd37fe68036e4de50031df82b5783108a8857e9 2425924 r-bioc-bitseq-dbgsym_1.24.0+dfsg-1_amd64.deb
 d25a471139f643bdb245baa26e3aa9199405cef0 10245 r-bioc-bitseq_1.24.0+dfsg-1_amd64.buildinfo
 4f6af7434b2cf1327c6d12b32e851b599166624e 951142 r-bioc-bitseq_1.24.0+dfsg-1_amd64.deb
Checksums-Sha256:
 9878551697283984dec810f9cefc2f8233aeccef002a453353a854822e8f7514 2156 r-bioc-bitseq_1.24.0+dfsg-1.dsc
 3f4639f6d6025e8fd1d512a6e8680a8a9ff4ddc053d3d82398cb236221b7582e 749532 r-bioc-bitseq_1.24.0+dfsg.orig.tar.xz
 11f14829af4088701035adc75b3d0d25b4b8163736a977a5a4ea079791c51923 5492 r-bioc-bitseq_1.24.0+dfsg-1.debian.tar.xz
 0d7996049cb92bbff6d52e792ed71283e47364136b4d331791c8545387fa33d9 2425924 r-bioc-bitseq-dbgsym_1.24.0+dfsg-1_amd64.deb
 29cbcced9eee99285efcca44a70ea0c7ad08cde0220456d363af4536f1842696 10245 r-bioc-bitseq_1.24.0+dfsg-1_amd64.buildinfo
 2501d602b5b218f472f221d8c1f0a90880e84dcb16f80b3070cb1cf8eaf8c674 951142 r-bioc-bitseq_1.24.0+dfsg-1_amd64.deb
Files:
 3f1c301462bdc58ab2efa5776ad5f5d5 2156 gnu-r optional r-bioc-bitseq_1.24.0+dfsg-1.dsc
 e3d20ac8f7ab9157dd9cde76295f0c9b 749532 gnu-r optional r-bioc-bitseq_1.24.0+dfsg.orig.tar.xz
 92796ab30472b5aab1c0a930a6274003 5492 gnu-r optional r-bioc-bitseq_1.24.0+dfsg-1.debian.tar.xz
 52b75e0427903f9ea7814f4a56c90fc3 2425924 debug optional r-bioc-bitseq-dbgsym_1.24.0+dfsg-1_amd64.deb
 8f8adf6fa0e1be801eeccd4373f3cee0 10245 gnu-r optional r-bioc-bitseq_1.24.0+dfsg-1_amd64.buildinfo
 fcd487dbb14733a25b0e41ba63048d23 951142 gnu-r optional r-bioc-bitseq_1.24.0+dfsg-1_amd64.deb

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