Bug#883686: marked as done (ITP: clonalorigin -- inference of homologous recombination in bacteria using whole genome sequences)
Your message dated Mon, 11 Dec 2017 22:00:11 +0000
with message-id <E1eOW7P-0008aA-98@fasolo.debian.org>
and subject line Bug#883686: fixed in clonalorigin 1.0-1
has caused the Debian Bug report #883686,
regarding ITP: clonalorigin -- inference of homologous recombination in bacteria using whole genome sequences
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
883686: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=883686
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : clonalorigin
Version : 1.0
Upstream Author : Xavier Didelot <xavier.didelot@gmail.com>
* URL : https://github.com/xavierdidelot/clonalorigin
* License : GPL
Programming Lang: C++
Description : inference of homologous recombination in bacteria using whole genome sequences
Bacteria, unlike us, can reproduce on their own. They do however have
mechanisms that transfer DNA between organisms, a process more formally
known as recombination. The mechanisms by which recombination takes
place have been studied extensively in the laboratory but much remains
to be understood concerning how, when and where recombination takes
place within natural populations of bacteria and how it helps them to
adapt to new environments. ClonalOrigin performs a comparative analysis
of the sequences of a sample of bacterial genomes in order to
reconstruct the recombination events that have taken place in their
ancestry.
Remark: The source code contains a GUI as well but this is non-functional.
Upstream confirmed himself that this was not used long ago and he has
no idea how to fix it. Thus this package will only contain the CLI. It
will be packaged by the Debian Med team at
https://anonscm.debian.org/git/debian-med/clonalorigin.git
--- End Message ---
--- Begin Message ---
Source: clonalorigin
Source-Version: 1.0-1
We believe that the bug you reported is fixed in the latest version of
clonalorigin, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 883686@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated clonalorigin package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 06 Dec 2017 14:44:43 +0100
Source: clonalorigin
Binary: clonalorigin
Architecture: source amd64
Version: 1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
clonalorigin - inference of homologous recombination in bacteria using whole gen
Closes: 883686
Changes:
clonalorigin (1.0-1) unstable; urgency=medium
.
* Initial release (Closes: #883686)
Checksums-Sha1:
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9f0ec0b5a69200f946de07767cb0eb701004dc57 1529208 clonalorigin-dbgsym_1.0-1_amd64.deb
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Checksums-Sha256:
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Files:
872aecbd0d9a93a7e905c9c1010c8f56 2012 science optional clonalorigin_1.0-1.dsc
310a0c5714e7629c052ab4da50c90f44 185865 science optional clonalorigin_1.0.orig.tar.gz
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ab8bd87363cf4c27244560ff2f0ce604 1529208 debug optional clonalorigin-dbgsym_1.0-1_amd64.deb
0b38a3d272014d31582e5ab3471d765e 5670 science optional clonalorigin_1.0-1_amd64.buildinfo
c1188dd8e802bbc8b12df2eae93b91bc 161316 science optional clonalorigin_1.0-1_amd64.deb
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