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Bug#876356: marked as done (ITP: clonalframeml -- Efficient Inference of Recombination in Whole Bacterial Genomes)

Your message dated Mon, 11 Dec 2017 22:00:10 +0000
with message-id <E1eOW7O-0008Zq-Q5@fasolo.debian.org>
and subject line Bug#876356: fixed in clonalframeml 1.11-1
has caused the Debian Bug report #876356,
regarding ITP: clonalframeml -- Efficient Inference of Recombination in Whole Bacterial Genomes
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
876356: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=876356
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : clonalframeml
  Version         : 1.11
  Upstream Author : Xavier Didelot <xavier.didelot@gmail.com>
* URL             : https://github.com/xavierdidelot/ClonalFrameML
* License         : GPL, LGPL
  Programming Lang: C++
  Description     : Efficient Inference of Recombination in Whole Bacterial Genomes
 ClonalFrameML is a software package that performs efficient inference of
 recombination in bacterial genomes. ClonalFrameML was created by Xavier
 Didelot and Daniel Wilson. ClonalFrameML can be applied to any type of
 aligned sequence data, but is especially aimed at analysis of whole
 genome sequences. It is able to compare hundreds of whole genomes in a
 matter of hours on a standard Desktop computer. There are three main
 outputs from a run of ClonalFrameML: a phylogeny with branch lengths
 corrected to account for recombination, an estimation of the key
 parameters of the recombination process, and a genomic map of where
 recombination took place for each branch of the phylogeny.
 .
 ClonalFrameML is a maximum likelihood implementation of the Bayesian
 software ClonalFrame which was previously described by Didelot and
 Falush (2007). The recombination model underpinning ClonalFrameML is
 exactly the same as for ClonalFrame, but this new implementation is a
 lot faster, is able to deal with much larger genomic dataset, and does
 not suffer from MCMC convergence issues


Remark: This program is packaged since it is to some extend a successor
 of clonalframe which might be lost due to the removal of Qt4.  It will
 be maintained by the Debian Med team at
   https://anonscm.debian.org/git/debian-med/clonalframeml.git

--- End Message ---
--- Begin Message --- 
Source: clonalframeml
Source-Version: 1.11-1

We believe that the bug you reported is fixed in the latest version of
clonalframeml, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 876356@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated clonalframeml package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 21 Sep 2017 13:10:41 +0200
Source: clonalframeml
Binary: clonalframeml
Architecture: source amd64
Version: 1.11-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 clonalframeml - Efficient Inference of Recombination in Whole Bacterial Genomes
Closes: 876356
Changes:
 clonalframeml (1.11-1) unstable; urgency=medium
 .
   * Initial release (Closes: #876356)
Checksums-Sha1:
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 aa0b8f1f3bbace79daf8b7cd1540986b7367cd61 102745 clonalframeml_1.11.orig.tar.gz
 2e010fa697e47f90f01134d53f92cfe6aec8999f 4080 clonalframeml_1.11-1.debian.tar.xz
 3b947b72eaa6113278d358adda9cca88898ceb1f 548760 clonalframeml-dbgsym_1.11-1_amd64.deb
 3cf8a62ba82d7e5d7fd83f85928888cb3d51db83 5583 clonalframeml_1.11-1_amd64.buildinfo
 616be91cfb5114cc69f9b2114a96751f09fb93c3 94504 clonalframeml_1.11-1_amd64.deb
Checksums-Sha256:
 9844ed5867c004a0222ad2170ace1b7a7424e308689be42f1f21665f28a77c49 2011 clonalframeml_1.11-1.dsc
 395e2f14a93aa0b999fa152d25668b42450c712f3f4ca305b34533317e81cc84 102745 clonalframeml_1.11.orig.tar.gz
 d54f291ac48074c973d986ee40dbe807b2f74255af0b5d87de05a326432ca0c1 4080 clonalframeml_1.11-1.debian.tar.xz
 50fa171c0e2532bd8de4560311c01eba32ebc7fe52628ef5ebfe6d251cd9a73c 548760 clonalframeml-dbgsym_1.11-1_amd64.deb
 bec553c13d53859c538af423e54fe86b5c2013b5138abe5e3eed79f2094cca04 5583 clonalframeml_1.11-1_amd64.buildinfo
 f38a7a2e4eb447f40eb54f07e1faa02abac94189f228511fb8e5fc359a32b302 94504 clonalframeml_1.11-1_amd64.deb
Files:
 1bd36f66e423acc6c056e30375061c26 2011 science optional clonalframeml_1.11-1.dsc
 f137cc4214d71ca1a63e075d052687f3 102745 science optional clonalframeml_1.11.orig.tar.gz
 70103f6a988178bb9a8f88bf7873ed3d 4080 science optional clonalframeml_1.11-1.debian.tar.xz
 8b4b7e452b91ccaaed96c7df342c9ae2 548760 debug optional clonalframeml-dbgsym_1.11-1_amd64.deb
 6e25c43f9b6ff1dbb97f63ca408f1121 5583 science optional clonalframeml_1.11-1_amd64.buildinfo
 6a05441be1b10258cf81e5175a3b98c2 94504 science optional clonalframeml_1.11-1_amd64.deb

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--- End Message ---
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