Bug#861721: marked as done (ITP: e-mem -- Efficient computation of Maximal Exact Matches for very large genomes)
Your message dated Fri, 05 May 2017 11:00:10 +0000
with message-id <E1d6ay2-000DWb-Pn@fasolo.debian.org>
and subject line Bug#861721: fixed in e-mem 0.0+20160706-1
has caused the Debian Bug report #861721,
regarding ITP: e-mem -- Efficient computation of Maximal Exact Matches for very large genomes
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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861721: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=861721
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : e-mem
Version : 0.0+20160706
Upstream Author : Nilesh Khiste, Lucian Ilie
* URL : http://www.csd.uwo.ca/~ilie/E-MEM/
* License : GPL
Programming Lang: C++
Description : Efficient computation of Maximal Exact Matches for very large genomes
E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that
does not use full text indexes. The algorithm uses much less space and
is highly amenable to parallelization. It can compute all MEMs of
minimum length 100 between the whole human and mouse genomes on a 12
core machine in 10 min and 2 GB of memory; the required memory can be as
low as 600 MB. It can run efficiently genomes of any size. Extensive
testing and comparison with currently best algorithms is provided.
.
Mummer has many different scripts where one of the key program is MEM
computation. In all the scripts, the MEM computation program can be
replaced with e-mem with ease for better performance.
Remark: I wonder whether the package name is not to generic but do not
see a really strong reason to rename the package.
The package will be maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/e-mem.git
--- End Message ---
--- Begin Message ---
Source: e-mem
Source-Version: 0.0+20160706-1
We believe that the bug you reported is fixed in the latest version of
e-mem, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 861721@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated e-mem package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 03 May 2017 10:04:53 +0200
Source: e-mem
Binary: e-mem
Architecture: source amd64
Version: 0.0+20160706-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
e-mem - Efficient computation of Maximal Exact Matches for very large gen
Closes: 861721
Changes:
e-mem (0.0+20160706-1) unstable; urgency=medium
.
* Initial release (Closes: #861721)
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