Your message dated Thu, 26 Jan 2017 22:00:11 +0000 with message-id <E1cWs5T-0006G9-1V@fasolo.debian.org> and subject line Bug#851342: fixed in baitfisher 1.0+dfsg-1 has caused the Debian Bug report #851342, regarding ITP: baitfisher -- package for designing hybrid enrichment probes to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner@bugs.debian.org immediately.) -- 851342: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=851342 Debian Bug Tracking System Contact owner@bugs.debian.org with problems
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- To: "submit@bugs.debian.org" <submit@bugs.debian.org>
- Subject: ITP: baitfisher -- package for designing hybrid enrichment probes
- From: olivier sallou <olivier.sallou@gmail.com>
- Date: Sat, 14 Jan 2017 08:22:58 +0000
- Message-id: <[🔎] CAEwx8oSiqurMX6ktSd_q4Wzh=WmEiS04meyQJydd+hEiowaVHA@mail.gmail.com>
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Package: wnppSeverity: wishlistOwner: Olivier Sallou <osallou@debian.org>* Package name : baitfisherVersion : 1.0Upstream Author : Christoph Mayer* License : GPLProgramming Lang: C++Description : package for designing hybrid enrichment probesThe BaitFisher package consists of two programs: BaitFisher andBaitFilter.BaitFisher was been designed to construct hybrid enrichment baits frommultiple sequence alignments (MSAs) or annotated features in MSAs. Themain goal of BaitFisher is to avoid redundancy in the construction ofbaits by designing fewer baits in conserved regions of the MSAs anddesigning more baits in variable regions. This makes use of the factthat hybrid enrichment baits can differ to some extends from the targetregion, which they should capture in the enrichment procedure. Byspecifying the allowed distance between baits and the sequences in theMSAs the user can control the allowed bait-to-target distance and thedegree of reduction in the number of baits that are designed. See theBaitFisher paper for details.BaitFilter was designed (i) to determine whether baits bindunspecifically to a reference genome, (ii) to filter baits that onlyhave partial length matches to a reference genome, (iii) to determinethe optimal bait region in a MSA and to convert baits to a format thatcan be uploaded at a bait constructing company. The optimal bait regioncan be the most conserved region in the MSA or the region with thehighest number of sequences without gaps or ambiguous nucleotides.
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- To: 851342-close@bugs.debian.org
- Subject: Bug#851342: fixed in baitfisher 1.0+dfsg-1
- From: Olivier Sallou <osallou@debian.org>
- Date: Thu, 26 Jan 2017 22:00:11 +0000
- Message-id: <E1cWs5T-0006G9-1V@fasolo.debian.org>
Source: baitfisher Source-Version: 1.0+dfsg-1 We believe that the bug you reported is fixed in the latest version of baitfisher, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 851342@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Olivier Sallou <osallou@debian.org> (supplier of updated baitfisher package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmaster@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 13 Jan 2017 10:27:13 +0000 Source: baitfisher Binary: baitfisher Architecture: source amd64 Version: 1.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Olivier Sallou <osallou@debian.org> Description: baitfisher - software package for designing hybrid enrichment probes Closes: 851342 Changes: baitfisher (1.0+dfsg-1) unstable; urgency=medium . * Initial release (Closes: #851342) Checksums-Sha1: 1e2c9f56b3bc34126d3c77ea73523de170cd7eeb 1974 baitfisher_1.0+dfsg-1.dsc 42760620f2b706a0d315f02b5b2db6e8bc927579 222820 baitfisher_1.0+dfsg.orig.tar.xz 57995156607111ddf0119fdff8e0cd6e6906901d 3632 baitfisher_1.0+dfsg-1.debian.tar.xz 8ca27d4ebd27dd60f29dd2e8521a87807188123b 14854 baitfisher-dbgsym_1.0+dfsg-1_amd64.deb b4b47edc1fef7b5998e2f6ab974bd8c34ebea71f 4682 baitfisher_1.0+dfsg-1_amd64.buildinfo 5c9b7b9460e0a94cfb058e852a5336af5a69c5f9 191528 baitfisher_1.0+dfsg-1_amd64.deb Checksums-Sha256: d0025119cf8a9fb2056f027e5c9f70476d1de8115b8e98e84c89ca4e91eb9cba 1974 baitfisher_1.0+dfsg-1.dsc 3d826dca179e46562cb7b51e72ff583f95370f7b6331ab895d3c9a13d172cb69 222820 baitfisher_1.0+dfsg.orig.tar.xz 4825cce79a58caf2f14d6181b4dd7c860c0ce3cc6cd591c5fd5b80389e9621a7 3632 baitfisher_1.0+dfsg-1.debian.tar.xz 39e7d971944b79c40345e68ad4474ab4670281bdbe5478f3e19cbfefc9bd7416 14854 baitfisher-dbgsym_1.0+dfsg-1_amd64.deb ed3f10ec47b01b3a544c97c9f23df2d9200483b351ea50a92fc6ab02f6d03af0 4682 baitfisher_1.0+dfsg-1_amd64.buildinfo 666b9b58dc017a5636af444e4adc47227715c96c077dcf97c973a89d89db7329 191528 baitfisher_1.0+dfsg-1_amd64.deb Files: ddc3758cf9c6090ec1f5e52f91dc5cb4 1974 science optional baitfisher_1.0+dfsg-1.dsc e8d5f3d4762141bb4805867445ede9f8 222820 science optional baitfisher_1.0+dfsg.orig.tar.xz e184719baa7bba0c58f3bad89518f4a5 3632 science optional baitfisher_1.0+dfsg-1.debian.tar.xz daa087724a1e30fcc913589a3c1c34cb 14854 debug extra baitfisher-dbgsym_1.0+dfsg-1_amd64.deb 626614571d7df5671a87dc99cebe9af2 4682 science optional baitfisher_1.0+dfsg-1_amd64.buildinfo 2e8af65b959b74acc0aebead517d5d9e 191528 science optional baitfisher_1.0+dfsg-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJYeeRZAAoJEHjcaNsybYQ4xF4QAIV3wj4p7MC+wFWTwOTqXbLo QRk/HzQuIaZBdCzWtcym4Gav7UqrWu31Mvkk6N2AZ79ni05kyR1oLB8dWYJy/8Th G5fRhktF3wJNCYgHQCcIKgpwkkwigWl6V1XLTE7FyjIY6E+x43Ts7fPtXQNiMhH2 24i/hTPAQ6LX5L8z0Pu660iP1p0L1LIQaDwpRJqiGBguY/n5k++tAMQuFUSeHhsv nDOFZuVJbXo+2QF002IUIQQ3FDJLEnp8EoalNwgt8960FoZ/3E8IHmjfUBWthDNc gSgsBzIvnvu3OY4h2m4YvKIdvmn4giwLSPda/55CoWP9660ZHW/TFKUDV04lQCDC ZZsszd7LUrk5asq6SJuPL6A5aaPKzbT5vut5eFI2BIQGJcjhSDnZVFMnC/0miYM/ LDIP2ezfKJL+cpLZXl8RwnT8MEbCuFGA5N8jxKPs1CLYdgowJ+vCrmhhW0RN5R9h +9xZwcADmBqn/T4HQpj9q/AFl/VBbJwQYayMLwb8slVGbfzx4WUkohpE8zDqYRuU jUEVkdaQdO/jCNyCP7Y0epIM+PhUak/PADBE2Z3Pg1jIoIEqHOKcYJONDvlETLk3 sq+j7YAV2uT8P/u/Oqk4wzLY4k4npD/+A8NG9FdJM4iL2YLSm9eWlRLLwn3efhuc ZPqLhWwRbwlzqB9DHLJY =kzj+ -----END PGP SIGNATURE-----
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