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Bug#800339: marked as done (ITP: salmon -- wicked-fast transcript quantification from RNA-seq data)

Your message dated Fri, 05 Feb 2016 23:05:20 +0000
with message-id <E1aRpRI-0004fw-6I@franck.debian.org>
and subject line Bug#800339: fixed in salmon 0.4.2+ds1-1
has caused the Debian Bug report #800339,
regarding ITP: salmon -- wicked-fast transcript quantification from RNA-seq data
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)


-- 
800339: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=800339
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Owner: "Debian Med Team" <debian-med@lists.debian.org>
Severity: wishlist
X-Debbugs-CC:  debian-med@lists.debian.org

* Package name    : salmon
  Version         : 0.4.2
  Upstream Author : Rob Patro, Carl Kingsford and Steve Mount
* URL             : https://github.com/COMBINE-lab/salmon
* License         : GPL-3
  Programming Lang: C++
  Description     : wicked-fast transcript quantification from RNA-seq data

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.

The result is a versatile tool that fits nicely into many different pipelines. For example, you can choose to make use of our lightweight alignments by providing Salmon with raw sequencing reads, or, if it is more convenient, you can provide Salmon with regular alignments (e.g. computed with your favorite aligner), and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment.

This package will be maintained as part of the Debian Med packaging team.

--- End Message ---
--- Begin Message --- 
Source: salmon
Source-Version: 0.4.2+ds1-1

We believe that the bug you reported is fixed in the latest version of
salmon, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 800339@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe <crusoe@ucdavis.edu> (supplier of updated salmon package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Fri, 18 Sep 2015 18:40:38 -0700
Source: salmon
Binary: salmon
Architecture: source amd64
Version: 0.4.2+ds1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <crusoe@ucdavis.edu>
Description:
 salmon     - wicked-fast transcript quantification from RNA-seq data
Closes: 800339
Changes:
 salmon (0.4.2+ds1-1) unstable; urgency=low
 .
   * Initial release (Closes: #800339)
Checksums-Sha1:
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 c6a43f86d009904946909adf953992200a5c3a66 865676 salmon_0.4.2+ds1.orig.tar.gz
 e837b7e063ce9dc95c39cc1369053ea027ebad34 13348 salmon_0.4.2+ds1-1.debian.tar.xz
 4868f127e88c57d1d0b8fc1d56c995fb7b5b795f 167314 salmon-dbgsym_0.4.2+ds1-1_amd64.deb
 2722bca663722bf679b5bf8641e7c02c2f552640 1277292 salmon_0.4.2+ds1-1_amd64.deb
Checksums-Sha256:
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Files:
 a30b2813d046c04d8979b91cd0080147 2296 science optional salmon_0.4.2+ds1-1.dsc
 10375315ec2361c9eb64cba32efd1492 865676 science optional salmon_0.4.2+ds1.orig.tar.gz
 9ce684a1b0e0c8687252680f1a2d38aa 13348 science optional salmon_0.4.2+ds1-1.debian.tar.xz
 ead55fb447ea4f7c0fbebcd8c230aef3 167314 debug extra salmon-dbgsym_0.4.2+ds1-1_amd64.deb
 dd1d03006fdbde8779b7053c423f99bd 1277292 science optional salmon_0.4.2+ds1-1_amd64.deb

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