[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#797676: marked as done (ITP: kineticstools -- detection of DNA modifications)

Your message dated Tue, 02 Feb 2016 12:00:33 +0000
with message-id <E1aQZdJ-0006ag-U2@franck.debian.org>
and subject line Bug#797676: fixed in kineticstools 0.5.1+20150828+git3aa3d96+dfsg-1
has caused the Debian Bug report #797676,
regarding ITP: kineticstools -- detection of DNA modifications
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
797676: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=797676
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Control: block 787977 by -1

* Package name    : python-kineticstools
  Version         : 0.5.1
  Upstream Author : Pacific Biosciences <devnet@pacificbiosciences.com>
* URL             : https://github.com/PacificBiosciences/kineticsTools
* License         : BSD
  Programming Lang: Python
  Description     : detecting DNA modifications from single molecule, real-time sequencing data

kineticsTool loads IPDs observed at each position in the genome, and compares
those IPDs to value expected for unmodified DNA, and outputs the result of
this statistical test. The expected IPD value for unmodified DNA can come
from either an in-silico control or an amplified control. The in silico control
is trained by PacBio and shipped with the package. It predicts predicts the
IPD using the local sequence context around the current position. An amplified
control dataset is generated by sequencing unmodified DNA with the same
sequence as the test sample. An amplified control sample is usually generated
by whole-genome amplification of the original sample.

This package is part of the SMRT Analysis suite and is to be handled by the
Debian Med team.

--- End Message ---
--- Begin Message --- 
Source: kineticstools
Source-Version: 0.5.1+20150828+git3aa3d96+dfsg-1

We believe that the bug you reported is fixed in the latest version of
kineticstools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 797676@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Afif Elghraoui <afif@ghraoui.name> (supplier of updated kineticstools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Wed, 09 Dec 2015 22:36:33 -0800
Source: kineticstools
Binary: kineticstools python-kineticstools
Architecture: source all amd64
Version: 0.5.1+20150828+git3aa3d96+dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <afif@ghraoui.name>
Description:
 kineticstools - detection of DNA modifications
 python-kineticstools - detection of DNA modifications (Python 2 library)
Closes: 797676
Changes:
 kineticstools (0.5.1+20150828+git3aa3d96+dfsg-1) unstable; urgency=low
 .
   * Initial release (Closes: #797676)
Checksums-Sha1:
 946c092e34bc2edfd00532884313cae765f36991 2442 kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1.dsc
 2d8027a2458ed2e3f3db7366fe3dc9da67f15ef6 108198852 kineticstools_0.5.1+20150828+git3aa3d96+dfsg.orig.tar.xz
 488ad504705e1e6472a0641a2c2c66b1eafb19c1 4572 kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1.debian.tar.xz
 6bf077676d0eec60d4a8a5815d9bfdd765961bf1 12664 kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_all.deb
 6abe0a9bf924e430b953c2878d18351436ee97c6 101780388 python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_amd64.deb
Checksums-Sha256:
 59fe9d26fd4dd41d23d9a531e9dd88a848982a9675c6a04466f82a0433565683 2442 kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1.dsc
 c200a69c7c1f012d60b6790132c38d3d9ef7865790653379f009a1c0a3f2b4b2 108198852 kineticstools_0.5.1+20150828+git3aa3d96+dfsg.orig.tar.xz
 ad0ca1302c878aeab826760750a2ca93ac5c165e5a1d6dadc18b7c1710941ddf 4572 kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1.debian.tar.xz
 79b16d925533f960135e9e89c3eb5f6ff23c3ce16e06fa1c25708138b5f44b63 12664 kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_all.deb
 b1015467699a86633caad8e152d030d0959b394432218d5123732863099b8d15 101780388 python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_amd64.deb
Files:
 4eb18ca6668a551b2c01b983577106b3 2442 science optional kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1.dsc
 a003541a64d075423ffb570474db1941 108198852 science optional kineticstools_0.5.1+20150828+git3aa3d96+dfsg.orig.tar.xz
 8c4a770cee8be80cc269f730cf43eaa9 4572 science optional kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1.debian.tar.xz
 66a88bd93e5760829314239374e6f81c 12664 science optional kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_all.deb
 daaf686d8970dfcddf3044d14e2aacb3 101780388 python optional python-kineticstools_0.5.1+20150828+git3aa3d96+dfsg-1_amd64.deb

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1
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=BHa6
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: