[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#798218: marked as done (ITP: pbseqlib -- libraries for analyzing Pacific Biosciences sequences)

Your message dated Wed, 09 Dec 2015 23:00:26 +0000
with message-id <E1a6nik-0003Ll-Tq@franck.debian.org>
and subject line Bug#798218: fixed in pbseqlib 0~20151014+gitbe5d1bf-1
has caused the Debian Bug report #798218,
regarding ITP: pbseqlib -- libraries for analyzing Pacific Biosciences sequences
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
798218: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798218
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging <debian-med-packaging-team@lists.alioth.debian.org>
Control: affects -1 blasr

* Package name    : pbseqlib
  Version         : 0~20150702+git98a302a
  Upstream Author : Pacific Biosciences <devnet@pacificbiosciences.com>
* URL             : https://github.com/PacificBiosciences/blasr_libcpp
* License         : BSD
  Programming Lang: C++
  Description     : libraries for analyzing Pacific Biosciences sequences

 These are libraries used by blasr and other executables such as samtoh5,
 loadPulses for analyzing Pacific Biosciences sequences.This library contains
 three sub-libraries, including pbdata, hdf and alignment:
 * libpbdata:
  library for handling Pacbio sequencing data
 * libpbhdf:
  library for handling Pacbio hdf5 files (e.g., *.pls.h5, *.rgn.h5, *.bas.h5)
 * libblasr:
  library for aligning Pacbio reads to target sequences used in blasr


This package is part of the SMRT Analysis suite. It will be maintained by the
Debian Med team.

--- End Message ---
--- Begin Message --- 
Source: pbseqlib
Source-Version: 0~20151014+gitbe5d1bf-1

We believe that the bug you reported is fixed in the latest version of
pbseqlib, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 798218@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Afif Elghraoui <afif@ghraoui.name> (supplier of updated pbseqlib package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 16 Nov 2015 21:51:07 -0800
Source: pbseqlib
Binary: libpbseq libpbseq-dev libpbdata-dev libpbdata libpbihdf-dev libpbihdf libblasr-dev libblasr
Architecture: source amd64 all
Version: 0~20151014+gitbe5d1bf-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <afif@ghraoui.name>
Description:
 libblasr   - tools for aligning PacBio reads to target sequences
 libblasr-dev - tools for aligning PacBio reads to target sequences (development
 libpbdata  - tools for handling PacBio sequences
 libpbdata-dev - tools for handling PacBio sequences (development files)
 libpbihdf  - tools for handling PacBio hdf5 files
 libpbihdf-dev - tools for handling PacBio hdf5 files (development files)
 libpbseq   - library for analyzing PacBio sequencing data
 libpbseq-dev - library for analyzing PacBio sequencing data (development files)
Closes: 798218
Changes:
 pbseqlib (0~20151014+gitbe5d1bf-1) unstable; urgency=medium
 .
   * Initial release (Closes: #798218)
Checksums-Sha1:
 3bb6d5ff5649a6e9ccb18d58c21463ebf958de46 2490 pbseqlib_0~20151014+gitbe5d1bf-1.dsc
 f10e593dfce27240fdf75ff2a2f26854f586bc22 1286157 pbseqlib_0~20151014+gitbe5d1bf.orig.tar.gz
 ebddc1efe0d29e6bebc8295468f00fde5a26e664 3876 pbseqlib_0~20151014+gitbe5d1bf-1.debian.tar.xz
 b74c4d4d8f589c593b02eb06d37b3f18437022af 1623260 libblasr-dev_0~20151014+gitbe5d1bf-1_amd64.deb
 c8b5d46623077903f56585639ffbeb6a712542be 811062 libblasr_0~20151014+gitbe5d1bf-1_amd64.deb
 ae09f38cf825645dcc1de1775f7fa3be330eeb4d 161936 libpbdata-dev_0~20151014+gitbe5d1bf-1_amd64.deb
 6753e61e9b2c6f1dfd83f0e5bd8cb67c38a657c9 108196 libpbdata_0~20151014+gitbe5d1bf-1_amd64.deb
 1f3377c99d21da059230576023a254b12aa0e93d 195110 libpbihdf-dev_0~20151014+gitbe5d1bf-1_amd64.deb
 81cf358dd17f34a4d06ba405de035cc2178b3a77 119684 libpbihdf_0~20151014+gitbe5d1bf-1_amd64.deb
 3df121252a35fa08b1a603e6e44e5535620f009d 3260 libpbseq-dev_0~20151014+gitbe5d1bf-1_all.deb
 ae2009b080edc7bcaf2b0333ae24d4aebc3c4eef 3246 libpbseq_0~20151014+gitbe5d1bf-1_all.deb
Checksums-Sha256:
 08490e11e206f34a2864e51e140f2c9fb439209afb0ba04598cb402f58b21157 2490 pbseqlib_0~20151014+gitbe5d1bf-1.dsc
 91d36f8c5b0572246c0fe8fad9451dfa2aa4d0223ebc7cdc5eb09b6dde13a741 1286157 pbseqlib_0~20151014+gitbe5d1bf.orig.tar.gz
 2930aeed155be7d110e6b0e3f5e52ea19394668f86f276a19a9585bfdfb51c0e 3876 pbseqlib_0~20151014+gitbe5d1bf-1.debian.tar.xz
 25cdb137538d5765109046a1f87f6019ebfce396852737486be3b8a382487b75 1623260 libblasr-dev_0~20151014+gitbe5d1bf-1_amd64.deb
 5759601078279c9a0eba843451631c949dcf2807541e2eb4c0a0d0a165fa2dec 811062 libblasr_0~20151014+gitbe5d1bf-1_amd64.deb
 871ada52573ec381b3f695869f3bf31d052b7e021b337740b18bdef117bc8b5d 161936 libpbdata-dev_0~20151014+gitbe5d1bf-1_amd64.deb
 379f602f46e43744abc0d1942e648295b1d8788225a37ea889a992ac6131808b 108196 libpbdata_0~20151014+gitbe5d1bf-1_amd64.deb
 015c618b8dca98d63a84de01792eeeba012bc0e9cb2a52fe66a84d2b96f9c954 195110 libpbihdf-dev_0~20151014+gitbe5d1bf-1_amd64.deb
 0c234b1a6ee88a4ac3f7e3ba0165525ec1a5abb0fd189db269e29fa42535df1b 119684 libpbihdf_0~20151014+gitbe5d1bf-1_amd64.deb
 c46b8c559fd46b226614053f63e892fb96acb6e767b4fa5ee7420d1bce895d66 3260 libpbseq-dev_0~20151014+gitbe5d1bf-1_all.deb
 f54fb6c561b54081dc522a7a038eb65ebf8734943b488e45a9cd60a46031c71a 3246 libpbseq_0~20151014+gitbe5d1bf-1_all.deb
Files:
 3b4c63127e68c2176d2858d13edb8d62 2490 libs optional pbseqlib_0~20151014+gitbe5d1bf-1.dsc
 8ee9477021931061c50867a7a96e86ae 1286157 libs optional pbseqlib_0~20151014+gitbe5d1bf.orig.tar.gz
 284c127b1ece297042c7519419648f59 3876 libs optional pbseqlib_0~20151014+gitbe5d1bf-1.debian.tar.xz
 bbb951ad345b81fd8c51c452e8c697d0 1623260 libdevel optional libblasr-dev_0~20151014+gitbe5d1bf-1_amd64.deb
 3669ebd1680034f37ca1abae0d4bd902 811062 libs optional libblasr_0~20151014+gitbe5d1bf-1_amd64.deb
 df815c0bf011e574dc024f1a5c79a813 161936 libdevel optional libpbdata-dev_0~20151014+gitbe5d1bf-1_amd64.deb
 356eec0875edd727597ad5e1f688dc65 108196 libs optional libpbdata_0~20151014+gitbe5d1bf-1_amd64.deb
 5481d2fdf1dee8dbf24b52a1864e9d49 195110 libdevel optional libpbihdf-dev_0~20151014+gitbe5d1bf-1_amd64.deb
 ca3809ee0845df8897e382d4efbb0e63 119684 libs optional libpbihdf_0~20151014+gitbe5d1bf-1_amd64.deb
 433fdde06d20f123fa66ce063d14a082 3260 libdevel optional libpbseq-dev_0~20151014+gitbe5d1bf-1_all.deb
 a653738b176f0557fbd4e237c33743da 3246 metapackages optional libpbseq_0~20151014+gitbe5d1bf-1_all.deb

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1
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=bhSx
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: