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Bug#805529: marked as done (ITP: fastml -- maximum likelihood ancestral amino-acid sequence reconstruction)

Your message dated Sat, 05 Dec 2015 18:00:24 +0000
with message-id <E1a5H8C-0002Qw-0h@franck.debian.org>
and subject line Bug#805529: fixed in fastml 3.1-1
has caused the Debian Bug report #805529,
regarding ITP: fastml -- maximum likelihood ancestral amino-acid sequence reconstruction
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
805529: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=805529
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : fastml
  Version         : 3.1
  Upstream Author : Tal Pupko <talp@post.tau.ac.il>, Haim Ashkenazy <haim.ashkenazy@gmail.com>
* URL             : http://fastml.tau.ac.il/
* License         : GPL
  Programming Lang: C++
  Description     : maximum likelihood ancestral amino-acid sequence reconstruction
 FastML is a bioinformatics tool for the reconstruction of ancestral
 sequences based on the phylogenetic relations between homologous
 sequences. FastML runs several algorithms that reconstruct the ancestral
 sequences with emphasis on an accurate reconstruction of both indels and
 characters. For character reconstruction the previously described FastML
 algorithms are used to efficiently infer the most likely ancestral
 sequences for each internal node of the tree. Both joint and the
 marginal reconstructions are provided. For indels reconstruction the
 sequences are first coded according to the indel events detected within
 the multiple sequence alignment (MSA) and then a state-of-the-art
 likelihood model is used to reconstruct ancestral indels states. The
 results are the most probable sequences, together with posterior
 probabilities for each character and indel at each sequence position for
 each internal node of the tree. FastML is generic and is applicable for
 any type of molecular sequences (nucleotide, protein, or codon
 sequences).


Remark: This package is maintained by the Debian Med team at
  git://anonscm.debian.org/debian-med/fastml.git

--- End Message ---
--- Begin Message --- 
Source: fastml
Source-Version: 3.1-1

We believe that the bug you reported is fixed in the latest version of
fastml, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 805529@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated fastml package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 19 Nov 2015 09:01:33 +0100
Source: fastml
Binary: fastml
Architecture: source amd64
Version: 3.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 fastml     - maximum likelihood ancestral amino-acid sequence reconstruction
Closes: 805529
Changes:
 fastml (3.1-1) unstable; urgency=low
 .
   * Initial release (Closes: #805529)
Checksums-Sha1:
 58bb2a76ea14d2826dd27c08eb1f17f1bb3c1ad0 1859 fastml_3.1-1.dsc
 9cbb702f60bcc6514ceb0b0155ea9c4378fe91bf 835771 fastml_3.1.orig.tar.gz
 1849444dfdc94ecaf2e43e8b23416fd4cdf580e5 6908 fastml_3.1-1.debian.tar.xz
 6e32173537621db82d2dbaf490a20a4b67753732 938912 fastml_3.1-1_amd64.deb
Checksums-Sha256:
 06aafd36d68a4812083543bbd960a89892ca86e0f4f28385d8bf7510b7a68025 1859 fastml_3.1-1.dsc
 16c8631a4186f434f81f5b7e8c1147660e79b025b3c93a6db9889c30477bd5f4 835771 fastml_3.1.orig.tar.gz
 486cf033595ccae30650a0c05bf1d868b1e818b6ba16bf0d5c5b00b02f33b21c 6908 fastml_3.1-1.debian.tar.xz
 041b1ffb40a4501245f90c53ec2e38e33820fb45980e9e7e2b7825ecb8ee3e10 938912 fastml_3.1-1_amd64.deb
Files:
 fdbbb3eaf3846ac06658d62fb386b9d0 1859 science optional fastml_3.1-1.dsc
 a553572d6bd96bd308e8aeea32f59f89 835771 science optional fastml_3.1.orig.tar.gz
 0617d1c27ccbdf46e7284a0cd4e8af30 6908 science optional fastml_3.1-1.debian.tar.xz
 3768c4f9eb7d72e0eb6b6782f23fffd2 938912 science optional fastml_3.1-1_amd64.deb

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