Bug#794699: marked as done (ITP: sumatra -- fast and exact comparison and clustering of sequences)
Your message dated Sun, 16 Aug 2015 12:00:30 +0000
with message-id <E1ZQwc2-0002kA-Rd@franck.debian.org>
and subject line Bug#794699: fixed in sumatra 1.0.10-1
has caused the Debian Bug report #794699,
regarding ITP: sumatra -- fast and exact comparison and clustering of sequences
to be marked as done.
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If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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794699: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=794699
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : sumatra
Version : 1.0.03
Upstream Author : Tiayyba Riaz e.a
* URL : http://metabarcoding.org/sumatra
* License : CeCILL-2
Programming Lang: C
Description : fast and exact comparison and clustering of sequences
With the development of next-generation sequencing, efficient tools are
needed to handle millions of sequences in reasonable amounts of time.
Sumatra is a program developed by the LECA. Sumatra aims to compare
sequences in a way that is fast and exact at the same time. This tool
has been developed to be adapted to the type of data generated by DNA
metabarcoding, i.e. entirely sequenced, short markers. Sumatra computes
the pairwise alignment scores from one dataset or between two datasets,
with the possibility to specify a similarity threshold under which pairs
of sequences that have a lower similarity are not reported. The output
can then go through a classification process with programs such as MCL
or MOTHUR.
Remark: This package was prepared by Tim Booth for BioLinux as a
predependency for QIIME 1.9.1. It is taken over by Debian Med and
maintained at
svn://anonscm.debian.org/debian-med/trunk/packages/sumatra/trunk/
--- End Message ---
--- Begin Message ---
Source: sumatra
Source-Version: 1.0.10-1
We believe that the bug you reported is fixed in the latest version of
sumatra, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 794699@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated sumatra package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 06 Aug 2015 15:30:54 +0200
Source: sumatra
Binary: sumatra
Architecture: source amd64
Version: 1.0.10-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
sumatra - fast and exact comparison and clustering of sequences
Closes: 794699
Changes:
sumatra (1.0.10-1) unstable; urgency=medium
.
* Initial upload to Debian (Closes: #794699)
* New upstream version
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