Bug#782969: ITP: libmems -- library to support DNA string matching and comparative genomics

[Andreas Tille <tille@debian.org>]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : libmems
  Version         : 1.6
  Upstream Author : Aaron Darling <darling@cs.wisc.edu>
* URL             : http://sourceforge.net/p/mauve/code/HEAD/tree/libMems/trunk/
* License         : GPL
  Programming Lang: C++
  Description     : library to support DNA string matching and comparative genomics
 libMems is a freely available software development library to support DNA
 string matching and comparative genomics. Among other things, libMems
 implements an algorithm to perform approximate multi-MUM and multi-MEM
 identification. The algorithm uses spaced seed patterns in conjunction
 with a seed-and-extend style hashing method to identify matches. The method
 is efficient, requiring a maximum of only 16 bytes per base of the largest
 input sequence, and this data can be stored externally (i.e. on disk) to
 further reduce memory requirements.


Remark; This library is packaged by the Debian Med team as a
precondition of the Mauve multiple genome alignment package at

    git://anonscm.debian.org/debian-med/libmems.git