Bug#729282: ITP: htslib -- C library for high-throughput sequencing data formats
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>
Hello everybody,
I intend to package the HTSlib, that some existing packages (samtools,
tabix) will need later.
Cheers,
-- Charles Plessy, Tsurumi, Kanagawa, Japan
Package name : htslib
Version : 0.2
Upstream Author : See below
URL : https://github.com/samtools/htslib/tree/develop
License : Mostly MIT, see below
Programming Lang: C
Description : C library for high-throughput sequencing data formats
Package: libhts0
Architecture: any
Multi-Arch: same
Depends: ${shlibs:Depends},
${misc:Depends}
Description: C library for high-throughput sequencing data formats
HTSlib is a unified C library for accessing common file formats, such as SAM
(Sequence Alignment/Map) and VCF (Variant Call Format), used for nucleic acid
sequence data obtained by high-throughput sequencing.
.
HTSlib implements a generalized BAM (binary SAM) index. The HTSlib file
reader first looks for the new index and then for the old if the new index is
absent.
.
HTSlib is still experimental. It has not been tested on large-scale real data. Some
useful APIs are missing.
Package: libhts-dev
Architecture: any
Multi-Arch: same
Section: libdevel
Depends: ${shlibs:Depends},
${misc:Depends}
Description: Development files for the HTSlib
HTSlib is a unified C library for accessing common file formats, such as SAM
(Sequence Alignment/Map) and VCF (Variant Call Format), used for nucleic acid
sequence data obtained by high-throughput sequencing.
.
This package contains development files: headers, static library, manual pages,
etc.
Package: htslib-test
Architecture: all
Depends: ${misc:Depends}
Description: Test data for HTSlib
HTSlib is a unified C library for accessing common file formats, such as SAM
(Sequence Alignment/Map) and VCF (Variant Call Format), used for nucleic acid
sequence data obtained by high-throughput sequencing.
.
This package contains test files and scripts for the HTSlib.
Files: *
Copyright: (C) 2012-2013 Genome Research Ltd.
(c) 2008 Broad Institute / Massachusetts Institute of Technology
The Wellcome Trust Sanger Institute
(c) 2008, 2009, 2011 by Attractive Chaos <attractor@live.co.uk>
License: MIT
Files: cram/*
Copyright: (c) 2012-2013 Genome Research Ltd.
(c) 1995-1996 MEDICAL RESEARCH COUNCIL
License: Various_BSD-3-Clause
Files: cram/md5.?
Copyright: No copyright is claimed
License: solar-MD5
This is an OpenSSL-compatible implementation of the RSA Data Security, Inc.
MD5 Message-Digest Algorithm (RFC 1321).
.
Homepage:
http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5
.
Author:
Alexander Peslyak, better known as Solar Designer <solar at openwall.com>
.
This software was written by Alexander Peslyak in 2001. No copyright is
claimed, and the software is hereby placed in the public domain.
In case this attempt to disclaim copyright and place the software in the
public domain is deemed null and void, then the software is
Copyright (c) 2001 Alexander Peslyak and it is hereby released to the
general public under the following terms:
.
Redistribution and use in source and binary forms, with or without
modification, are permitted.
.
There's ABSOLUTELY NO WARRANTY, express or implied.
Files: htslib/razf.?
Copyright: 2008, Jue Ruan <ruanjue@gmail.com>, Heng Li <lh3@sanger.ac.uk>
License: BSD-2-clause~with-minor-differences-in-the-disclaimer
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