Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account
Hi Erik,
could you please confirm that you are interested in finding a sponsor
for your work? As I said the Debian Med team is really interested. In
case you have some time constraints or whatever I'd volunteer to commit
your work to our Vcs (please specify whether you prefer Git or SVN) and
will check whether it is ready for upload.
Kind regards and thanks so far for your work
Andreas.
On Thu, Nov 29, 2012 at 09:31:45AM +0100, Andreas Tille wrote:
> Hi Erik,
>
> it seems I missed your ITP - otherwise I would have most probably pinged
> you whether you intent to do the packaging inside the Debian Med team. We
> try to inject medical and microbiological software into Debian and your
> ITP seems to fit perfectly into our biology task[1].
>
> So I would suggest you join the Debian Med team (I checked whether you
> just have an account on alioth.debian.org but failed in searching for
> your name - otherwise I would have added you to the team right now). All
> steps are described in our team policy[2].
>
> Meanwhile I might check your packaging you provided at mentors however,
> I would strongly recommend (you might need require) that you choose at
> your preference either our SVN or Git repository (see [2]) for your
> packaging work to enable effective team maintenance. For instance I
> would turn your citation of the scientific paper into a debian/upstream
> reference which is way more flexible than simply putting it into the
> long description (which is deprecated).
>
> I hope you like this idea and we would be very happy to welcome you in
> our team.
>
> Kind regards
>
> Andreas.
>
> [1] http://debian-med.alioth.debian.org/tasks/bio
> [2] http://debian-med.alioth.debian.org/docs/policy.html
>
> > Package: wnpp
> > Severity: wishlist
> > Owner: Erik Sjölund <erik.sjolund@gmail.com>
> >
> > * Package name : prime-phylo
> > Version : 1.0.3
> > Upstream Author : Lars Arvestad<arve@csc.kth.se>, Bengt
> > Sennblad<bengt.sennblad@ki.se> and others
> > * URL : http://prime.sbc.su.se
> > * License : GPL-3
> > Programming Lang: C++
> > Description: Bayesian estimation of gene trees taking the species
> > tree into account
> >
> > PrIME (Probabilistic Integrated Models of Evolution) is a package
> > supporting inference of evolutionary parameters in a Bayesian framework
> > using MCMC. A distinguishing feature of PrIME is that the species tree is
> > taken into account when analyzing gene trees.
>
> --
> http://fam-tille.de
>
>
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