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Bug#690058: marked as done (ITP: conservation-code -- tool to score protein sequence conservation)

Your message dated Sun, 11 Nov 2012 22:00:06 +0000
with message-id <E1TXfZW-0001rj-1f@franck.debian.org>
and subject line Bug#690058: fixed in conservation-code 20110309.0-1
has caused the Debian Bug report #690058,
regarding ITP: conservation-code -- tool to score protein sequence conservation
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
690058: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=690058
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan <lkajan@rostlab.org>

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Hash: SHA1

* Package name    : conservation-code
  Version         : 20110309.0
  Upstream Author : John A. Capra <tonyc@cs.princeton.edu>, Mona Singh <mona@cs.princeton.edu>
* URL             : http://compbio.cs.princeton.edu/conservation/
* License         : GPL-2.0+
  Programming Lang: Python
  Description     : protein sequence conservation scoring tool
  Enhances        : concavity

 This package provides score_conservation(1), a tool to score protein sequence
 conservation.
 .
 The following conservation scoring methods are implemented:
  * sum of pairs
  * weighted sum of pairs
  * Shannon entropy
  * Shannon entropy with property groupings (Mirny and Shakhnovich 1995,
    Valdar and Thornton 2001)
  * relative entropy with property groupings (Williamson 1995)
  * von Neumann entropy (Caffrey et al 2004)
  * relative entropy (Samudrala and Wang 2006)
  * Jensen-Shannon divergence (Capra and Singh 2007)
 .
 A window-based extension that incorporates the estimated conservation of
 sequentially adjacent residues into the score for each column is also given.
 This window approach can be applied to any of the conservation scoring
 methods.
 .
 The program accepts alignments in the CLUSTAL and FASTA formats.
 .
 The sequence-specific output can be used as the conservation input for
 concavity.
 .
 Conservation is highly predictive in identifying catalytic sites and
 residues near bound ligands.


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--- End Message ---
--- Begin Message --- 
Source: conservation-code
Source-Version: 20110309.0-1

We believe that the bug you reported is fixed in the latest version of
conservation-code, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 690058@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Laszlo Kajan <lkajan@rostlab.org> (supplier of updated conservation-code package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


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Format: 1.8
Date: Tue, 09 Oct 2012 17:34:05 +0200
Source: conservation-code
Binary: conservation-code
Architecture: source all
Version: 20110309.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Laszlo Kajan <lkajan@rostlab.org>
Description: 
 conservation-code - protein sequence conservation scoring tool
Closes: 690058
Changes: 
 conservation-code (20110309.0-1) unstable; urgency=low
 .
   * Initial release. (Closes: #690058)
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