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Bug#689020: marked as done (ITP: concavity -- predictor of protein ligand binding sites from 3D structure and sequence conservation)

Your message dated Sun, 11 Nov 2012 16:00:48 +0000
with message-id <E1TXZxo-0000KW-LH@franck.debian.org>
and subject line Bug#689020: fixed in concavity 0.1-1
has caused the Debian Bug report #689020,
regarding ITP: concavity -- predictor of protein ligand binding sites from 3D structure and sequence conservation
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)


-- 
689020: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=689020
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan <lkajan@rostlab.org>

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Hash: SHA1

* Package name    : concavity
  Version         : 0.1
  Upstream Author : Thomas Funkhouser <funk@CS.Princeton.EDU>, John A. Capra <tonyc@cs.princeton.edu>
* URL             : http://compbio.cs.princeton.edu/concavity/
* License         : GPL-3+
  Programming Lang: C++
  Description     : predictor of protein ligand binding sites from 3D structure and sequence conservation

 ConCavity predicts protein ligand binding sites by combining evolutionary
 sequence conservation and 3D structure.
 .
 ConCavity takes as input a PDB format protein structure and (optionally)
 files that characterize the evolutionary sequence conservation of the chains
 in the structure file.
 .
 The following result files are produced (by default):
  * residue ligand binding predictions for each chain (*.scores)
  * residue ligand binding predictions in a PDB format file (residue
    scores placed in the temp. factor field, *_residue.pdb
  * pocket prediction locations in a DX format file (*.dx)
  * PyMOL script to visualize the predictions (*.pml)
 .
 ConCavity has many features.  The default run of concavity is equivalent to
 ConCavity^L in the paper:
 'Capra JA, Laskowski RA, Thornton JM, Singh M, and Funkhouser TA(2009)
 Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence
 Conservation and 3D Structure. PLoS Comput Biol, 5(12).'.

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--- End Message ---
--- Begin Message --- 
Source: concavity
Source-Version: 0.1-1

We believe that the bug you reported is fixed in the latest version of
concavity, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 689020@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Laszlo Kajan <lkajan@rostlab.org> (supplier of updated concavity package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


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Format: 1.8
Date: Fri, 28 Sep 2012 14:23:53 +0200
Source: concavity
Binary: concavity concavity-dbg
Architecture: source amd64
Version: 0.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Laszlo Kajan <lkajan@rostlab.org>
Description: 
 concavity  - predictor of protein ligand binding sites from structure and cons
 concavity-dbg - predictor of protein ligand binding sites (debug)
Closes: 689020
Changes: 
 concavity (0.1-1) unstable; urgency=low
 .
   * Initial release (Closes: #689020)
Checksums-Sha1: 
 7f28bea43c3414e7f691c204d72918a99c057b0a 2018 concavity_0.1-1.dsc
 7908d496df3ebcfa25863640a7c66653b32fa5fb 322152 concavity_0.1.orig.tar.xz
 6856edc81575a735f216d0aa2832f8ec4d8ae35d 9570 concavity_0.1-1.debian.tar.gz
 fdd0f6ae381d3c87fa8f3ec8d0385374c2116659 313992 concavity_0.1-1_amd64.deb
 869dda5afc45a80583c3d0ce2ee689e55c3f5316 929920 concavity-dbg_0.1-1_amd64.deb
Checksums-Sha256: 
 47fddfaed7d8b41d867027df5647d2b3d5d7a8ac090173d40b45fefc0396ee98 2018 concavity_0.1-1.dsc
 d139ad02edfedf5199432e34da1dc2be91004bcad650f30c03a69d21c9ab9f79 322152 concavity_0.1.orig.tar.xz
 c0de6df5119c5141f91767b50beca496c59452156667166a08a2ea130fa302dc 9570 concavity_0.1-1.debian.tar.gz
 61e31aa42faf121d1e1e4776cb0ebba37dba288e129ea6ae9891b454f950a17e 313992 concavity_0.1-1_amd64.deb
 c9c288a1249f547390786a7189e3f7aa237fcfd6787e03c2f1278a5d895e8df0 929920 concavity-dbg_0.1-1_amd64.deb
Files: 
 1584f8ee97e797481266a42ce6fc6da5 2018 science extra concavity_0.1-1.dsc
 953b08263ec627e9dc5bdd1c2e4cce0e 322152 science extra concavity_0.1.orig.tar.xz
 2e47f91eefcd227d8ac6941acfc09652 9570 science extra concavity_0.1-1.debian.tar.gz
 32ed52f7a0a6360eb527e62ef378db81 313992 science extra concavity_0.1-1_amd64.deb
 e72683ede77ace45fba619cefce25d7a 929920 debug extra concavity-dbg_0.1-1_amd64.deb

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