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Bug#680539: marked as done (ITP: hmmer2 -- profile hidden Markov models for protein sequence analysis (version 2))

Your message dated Tue, 14 Aug 2012 22:00:12 +0000
with message-id <E1T1P9o-0001Hp-I9@franck.debian.org>
and subject line Bug#680539: fixed in hmmer2 2.3.2-6
has caused the Debian Bug report #680539,
regarding ITP: hmmer2 -- profile hidden Markov models for protein sequence analysis (version 2)
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
680539: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=680539
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan <lkajan@rostlab.org>

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* Package name    : hmmer2
  Version         : 2.3.2
  Upstream Author : Sean Eddy <eddy@genetics.wustl.edu>
* URL             : ftp://selab.janelia.org/pub/software/hmmer/
* License         : GPL-2+
  Programming Lang: C
  Description     : profile hidden Markov models for protein sequence analysis (version 2)

 HMMER is an implementation of profile hidden Markov model methods for
 sensitive searches of biological sequence databases using multiple sequence
 alignments as queries.
 .
 Given a multiple sequence alignment as input, HMMER builds a statistical
 model called a "hidden Markov model" which can then be used as a query into
 a sequence database to find (and/or align) additional homologues of the
 sequence family.

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--- Begin Message --- 
Source: hmmer2
Source-Version: 2.3.2-6

We believe that the bug you reported is fixed in the latest version of
hmmer2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 680539@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Laszlo Kajan <lkajan@rostlab.org> (supplier of updated hmmer2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


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Format: 1.8
Date: Mon, 09 Jul 2012 17:46:31 +0200
Source: hmmer2
Binary: hmmer2 hmmer2-pvm hmmer2-doc
Architecture: source amd64 all
Version: 2.3.2-6
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Laszlo Kajan <lkajan@rostlab.org>
Description: 
 hmmer2     - profile hidden Markov models for protein sequence analysis
 hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs)
 hmmer2-pvm - HMMER programs with PVM (Parallel Virtual Machine) support
Closes: 680539
Changes: 
 hmmer2 (2.3.2-6) unstable; urgency=low
 .
   [Charles Plessy]
   * Enabled upstream checks in debian/rules.
   * Documented how the package is tested in debian/README.Debian
   * Switched Debhelper to mode 7 (debian/compat, debian/control).
   * Gathered some metadata about upstream in debian/upstream-metadata.yaml.
   * Checked conformance with Policy 3.8.3 and incremented Standards-Version
     in debian/control to reflect it.
 .
   [Laszlo Kajan]
   * Debhelper 8.
   * Policy version 3.9.3.
   * Renaming hmmer version 2 to hmmer2 in order to allow coexistence with
     hmmer (>=3) in wheezy.
   * Renaming binaries and man pages:
 .
      hmmalign     => hmm2align
      hmmbuild     => hmm2build
      hmmcalibrate => hmm2calibrate
      hmmconvert   => hmm2convert
      hmmemit      => hmm2emit
      hmmfetch     => hmm2fetch
      hmmindex     => hmm2index
      hmmpfam      => hmm2pfam
      hmmsearch    => hmm2search
 .
      hmmcalibrate-pvm => hmm2calibrate-pvm
      hmmpfam-pvm      => hmm2pfam-pvm
      hmmsearch-pvm    => hmm2search-pvm
 .
     in order to allow coexistence with those from hmmer (>=3).
     (Closes: #680539)
   * debian/rules: remove binary without source documentation
     Userguide.pdf in get-orig-source target
Checksums-Sha1: 
 1cd8a7fedf56e4887a5a4ae1984f25ec8504552b 1564 hmmer2_2.3.2-6.dsc
 90f99ef7835b130a2977e76759184dd8805f9969 480336 hmmer2_2.3.2.orig.tar.xz
 eb13fa0d640b9e86274ed1ed33e64bd7e9fb3148 10322 hmmer2_2.3.2-6.debian.tar.gz
 5882bafce60094197e7ad05dd3496242c5e76cd9 1261228 hmmer2_2.3.2-6_amd64.deb
 7e3da34b4b063be3ecfda4bc1301af603b87c9d5 402840 hmmer2-pvm_2.3.2-6_amd64.deb
 5f10fcbfb0d2cc2d88fca59019c6af93d5e64c04 86432 hmmer2-doc_2.3.2-6_all.deb
Checksums-Sha256: 
 f6bae144a0763046002f47de67d6302d8dd4e76a4d1d47e20df63c76632e5e19 1564 hmmer2_2.3.2-6.dsc
 8b2e14347497b12a36bb8ed446b91e320ea7fd73da31093e5143b6126c713681 480336 hmmer2_2.3.2.orig.tar.xz
 84aac8603949a4e558dc0fd7e82b0345fab5f0142e3fc4d5f5b3160595b17577 10322 hmmer2_2.3.2-6.debian.tar.gz
 db0369421a2f9f816221ab90cca294a20c19e1c981a0f6d7222abed2fc98b1c4 1261228 hmmer2_2.3.2-6_amd64.deb
 1608e2354310bfd463df3e74d17a99066cef16ad32d0c7b7dc4bac9a61f7340c 402840 hmmer2-pvm_2.3.2-6_amd64.deb
 4df2171f5f27fbbc75790b6cd6a7fe80123a4cee2aef3fa1620c6d399f0e44fe 86432 hmmer2-doc_2.3.2-6_all.deb
Files: 
 11c2ee5d14d02b78a8099e328875c787 1564 science optional hmmer2_2.3.2-6.dsc
 26d19a763cab2de0214a3fc9750e710a 480336 science optional hmmer2_2.3.2.orig.tar.xz
 053c8b0ed7b558ee01d8df5419b80d11 10322 science optional hmmer2_2.3.2-6.debian.tar.gz
 262bc8fd9912858766ead21854e55d2b 1261228 science optional hmmer2_2.3.2-6_amd64.deb
 b005d7509efbfd76f66de774b91edb6b 402840 science optional hmmer2-pvm_2.3.2-6_amd64.deb
 77a51dd7fdd5208ee68a1684eb4f6d50 86432 doc optional hmmer2-doc_2.3.2-6_all.deb

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