Bug#682213: marked as done (ITP: trimmomatic -- flexible read trimming tool for Illumina NGS data)
Your message dated Tue, 31 Jul 2012 19:32:38 +0000
with message-id <E1SwIBK-00063n-7U@franck.debian.org>
and subject line Bug#682213: fixed in trimmomatic 0.22-1
has caused the Debian Bug report #682213,
regarding ITP: trimmomatic -- flexible read trimming tool for Illumina NGS data
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
682213: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=682213
Debian Bug Tracking System
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moeller@gmx.de>
* Package name : trimmomatic
Version : 0.22
* URL : http://www.usadellab.org/cms/index.php?page=trimmomatic
* License : GPL-3+
Programming Lang: Java
Description : flexible read trimming tool for Illumina NGS data
Trimmomatic performs a variety of useful trimming tasks for illumina
paired-end and single ended data.The selection of trimming steps and
their associated parameters are supplied on the command line.
.
The current trimming steps are:
* ILLUMINACLIP: Cut adapter and other illumina-specific sequences from
the read.
* SLIDINGWINDOW: Perform a sliding window trimming, cutting once thes
average quality within the window falls below a threshold.
* LEADING: Cut bases off the start of a read, if below a threshold quality
* TRAILING: Cut bases off the end of a read, if below a threshold quality
* CROP: Cut the read to a specified length
* HEADCROP: Cut the specified number of bases from the start of the read
* MINLENGTH: Drop the read if it is below a specified length
* TOPHRED33: Convert quality scores to Phred-33
* TOPHRED64: Convert quality scores to Phred-64
It works with FASTQ (using phred + 33 or phred + 64 quality scores,
depending on the Illumina pipeline used), either uncompressed or
gzipp'ed FASTQ. Use of gzip format is determined based on the .gz
extension.
Packaging is mostly done, inspectable at the typical DebianMed location, i.e.
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/trimmomatic/trunk/
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/trimmomatic/trunk/
--- End Message ---
--- Begin Message ---
Source: trimmomatic
Source-Version: 0.22-1
We believe that the bug you reported is fixed in the latest version of
trimmomatic, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 682213@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated trimmomatic package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 25 Jul 2012 16:34:43 +0200
Source: trimmomatic
Binary: trimmomatic
Architecture: source all
Version: 0.22-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
trimmomatic - flexible read trimming tool for Illumina NGS data
Closes: 682213
Changes:
trimmomatic (0.22-1) unstable; urgency=low
.
* Initial release (Closes: #682213).
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Files:
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--- End Message ---
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