[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#681271: marked as done (ITP: predictnls -- PredictNLS is an automated tool for the analysis and in silico determination of Nuclear Localization Signals (NLS). In NLS discovery mode, PredictNLS searches a query protein for known and potential NLS's in NLSdb to determine if a protein is likely to be targeted to the nucleus. If the protein is determined to be nuclear, the program also reports if a known DNA binding motif is found. In Motif detection mode, the program can help you decide if a sequence motif is likely to act as a nuclear localization signal. The PredictNLS website also documents the largest collection of experimentally determined NLS's.)

Your message dated Tue, 31 Jul 2012 19:02:09 +0000
with message-id <E1SwHhp-0003Bf-9J@franck.debian.org>
and subject line Bug#681271: fixed in predictnls 1.0.20-1
has caused the Debian Bug report #681271,
regarding ITP: predictnls -- PredictNLS is an automated tool for the analysis and in silico determination of Nuclear Localization Signals (NLS). In NLS discovery mode, PredictNLS searches a query protein for known and potential NLS's in NLSdb to determine if a protein is likely to be targeted to the nucleus. If the protein is determined to be nuclear, the program also reports if a known DNA binding motif is found. In Motif detection mode, the program can help you decide if a sequence motif is likely to act as a nuclear localization signal. The PredictNLS website also documents the largest collection of experimentally determined NLS's.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
681271: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=681271
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: ertlj@in.tum.de


* Package name    : predictnls
  Version         : 1.0.18
  Upstream Author : Laszlo Kajan <lkajan@rostlab.org>
* URL             : http://www.rostlab.org/
* License         : GPL
  Programming Lang: Perl
  Description     : PredictNLS is an automated tool for the analysis and in silico determination of Nuclear Localization Signals (NLS). In NLS discovery mode, PredictNLS searches a query protein for known and potential NLS's in NLSdb to determine if a protein is likely to be targeted to the nucleus. If the protein is determined to be nuclear, the program also reports if a known DNA binding motif is found. In Motif detection mode, the program can help you decide if a sequence motif is likely to act as a nuclear localization signal. The PredictNLS website also documents the largest collection of experimentally determined NLS's.


PredictNLS predicts if your protein is nuclear.  If no NLS is found you can predict the subcellular localization of the protein using loctree.

--- End Message ---
--- Begin Message --- 
Source: predictnls
Source-Version: 1.0.20-1

We believe that the bug you reported is fixed in the latest version of
predictnls, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 681271@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Julia Ertl <ertlj@in.tum.de> (supplier of updated predictnls package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Tue, 10 Jul 2012 15:38:37 +0000
Source: predictnls
Binary: predictnls
Architecture: source all
Version: 1.0.20-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Julia Ertl <ertlj@in.tum.de>
Description: 
 predictnls - prediction and analysis of protein nuclear localization signals
Closes: 681271
Changes: 
 predictnls (1.0.20-1) unstable; urgency=low
 .
   * initial release (Closes: #681271)
Checksums-Sha1: 
 cd0137f84f68c944e74656a1b876a5eca5277c58 1407 predictnls_1.0.20-1.dsc
 9184e1912a357d5f49cca60a95a4f0367a487be9 2206935 predictnls_1.0.20.orig.tar.gz
 478afb769ef0a334d572b6443060fdea3890a5a1 3009 predictnls_1.0.20-1.debian.tar.gz
 5d4c52c11b223f2efdc1743afa6bcef0c4387781 2146468 predictnls_1.0.20-1_all.deb
Checksums-Sha256: 
 4577c9c5edfacd9bd6c5606f4771f93dc8320c5ef8a46c4cae975eea3b316413 1407 predictnls_1.0.20-1.dsc
 850f51083c64ed329651f719f35fc58d21f49e84170bd84fec482b8db2261099 2206935 predictnls_1.0.20.orig.tar.gz
 b6b2643e6503621f881d113a3c2f603e5c6c323a384f44d4c2c7ff37c97c1f3b 3009 predictnls_1.0.20-1.debian.tar.gz
 8bbdd2be2027368dde01187fbb8efe2eb32fe9351b630f5e0c0b99de84dd1077 2146468 predictnls_1.0.20-1_all.deb
Files: 
 47a301aba14936b10b201481431187ee 1407 science extra predictnls_1.0.20-1.dsc
 dc7d798e04cafda1248256bb1618910e 2206935 science extra predictnls_1.0.20.orig.tar.gz
 40ebb07c42b29366e41df212402483d2 3009 science extra predictnls_1.0.20-1.debian.tar.gz
 fe9d3ccf3489b03706b7f7045e38e404 2146468 science extra predictnls_1.0.20-1_all.deb

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.12 (GNU/Linux)

iEYEARECAAYFAlAFV5IACgkQYDBbMcCf01q19ACgsnmlyR1BxUGlwpfvnWfOzoSO
Z90AoJf40Sudh+gw0pcJ8uJU0u8zujT9
=nbd8
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: