Bug#680177: marked as done (ITP: libnhgri-blastall-perl -- Perl extension for running and parsing NCBI's BLAST 2.x)
Your message dated Sat, 28 Jul 2012 09:47:14 +0000
with message-id <E1Sv3cA-0001yG-LX@franck.debian.org>
and subject line Bug#680177: fixed in libnhgri-blastall-perl 0.66-1
has caused the Debian Bug report #680177,
regarding ITP: libnhgri-blastall-perl -- Perl extension for running and parsing NCBI's BLAST 2.x
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
680177: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=680177
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: jenzo@cbv.net
* Package name : libnhgri-blastall-perl
Version : 0.66
Upstream Author : Joseph Ryan <jfryan@nhgri.nih.gov>
* URL : http://genomes.nhgri.nih.gov/
* License : GPL
Programming Lang: Perl
Description : Perl extension for running and parsing NCBI's BLAST 2.x
If you have NCBI's BLAST2 or WU-BLAST installed locally and your environment is already set up you can use Perl's object-oriented capabilities to run your BLAST requests. Also if you have a blastcl3 binary from the toolkit (or binaries from our FTP site) you can run BLAST over the network. There are also some methods to BLAST single sequences against each other using the bl2seq binaries (also in the toolkit and binaries). You can BLAST one sequence against a library of sequences using the blast_one_to_many method. You can format databases with formatdb method. You can also have NCBI::Blastall read existing BLAST reports. If you have a database of repetitive DNA or other DNA you would like to mask out, you can use the mask method to mask the data against these databases. You can either use the filter or result methods to parse the report and access the various elements of the data.
--- End Message ---
--- Begin Message ---
Source: libnhgri-blastall-perl
Source-Version: 0.66-1
We believe that the bug you reported is fixed in the latest version of
libnhgri-blastall-perl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 680177@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Laszlo Kajan <lkajan@rostlab.org> (supplier of updated libnhgri-blastall-perl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 10 Jul 2012 16:53:42 +0200
Source: libnhgri-blastall-perl
Binary: libnhgri-blastall-perl
Architecture: source all
Version: 0.66-1
Distribution: unstable
Urgency: low
Maintainer: Debian Perl Group <pkg-perl-maintainers@lists.alioth.debian.org>
Changed-By: Laszlo Kajan <lkajan@rostlab.org>
Description:
libnhgri-blastall-perl - Perl extension for running and parsing NCBI's BLAST 2.x
Closes: 680177
Changes:
libnhgri-blastall-perl (0.66-1) unstable; urgency=low
.
* Initial release (Closes: 680177).
.
[Laszlo Kajan <lkajan@rostlab.org>]
* Changed debian/* license to 'like Perl' (Artistic or GPL-1+)
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