Bug#680610: ITP: predictprotein -- A service for sequence analysis and the prediction of protein structure and function

[s.domke@wzw.tum.de]

Package: wnpp
Severity: wishlist
Owner: s.domke@wzw.tum.de


* Package name    : predictprotein
  Version         : 1.0.0
  Upstream Author : Laszlo Kajan <lkajan@rostlab.org>
* URL             : http://www.predictprotein.org//
* License         : GPL
  Programming Lang: Perl
  Description     : A service for sequence analysis and the prediction of protein structure and function

PredictProtein is a sequence analysis suite providing prediction of protein
structure and function. It takes protein sequences or alignments as input
and provides the following per-residue or whole protein annotations: multiple
sequence alignments, PROSITE sequence motifs, low-complexity regions, nuclear
localisation signals, regions lacking regular structure (NORS), secondary
structure, solvent accessibility, globular regions, transmembrane helices,
coiled-coil regions, structural switch regions, disulfide-bonds, sub-cellular
localization, disordered regions, B-value flexibility, protein-protein
interaction sites and protein-DNA interaction sites. Upon request fold
recognition by prediction-based threading, CHOP domain assignments,
predictions of transmembrane strands and inter-residue contacts are also
available.