Bug#680539: ITP: hmmer2 -- profile hidden Markov models for protein sequence analysis (version 2)

[Laszlo Kajan <lkajan@rostlab.org>]

Hello Joachim!

I use predictprotein (ITP, soon in Debian) and snap (non-free) with version 2 of hmmer.

predictprotein is an umbrella package that runs a bunch of bioinformatics tools, none of which are about speech recognition though.
snap is for the prediction of effects of non-synonymous mutations in DNA.

HMMER is used to find homologues for protein sequences. I am not familiar with speech recognition at all... I have not heard of hmmer being used
for it.

Best regards,

Laszlo

On 06/07/12 19:43, Joachim Wiedorn wrote:
> Hello,
> 
> Laszlo Kajan wrote on 2012-07-06 18:47:
> 
>>  HMMER is an implementation of profile hidden Markov model methods for
>>  sensitive searches of biological sequence databases using multiple sequence
>>  alignments as queries.
> 
> Which software/packages do you use together with this package?
> 
> Is there a way to use this package directly together with some speech
> recognition software: cmusphinx or simon/julius?
> 
> ---
> Have a nice day.
> 
> Joachim (Germany)
>