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Bug#552101: marked as done (RFP: beast-mcmc -- Bayesian MCMC analysis of molecular sequences)

Your message dated Thu, 07 Jun 2012 21:32:21 +0000
with message-id <E1SckJZ-0005xD-K0@franck.debian.org>
and subject line Bug#552101: fixed in beast-mcmc 1.6.2-1
has caused the Debian Bug report #552101,
regarding RFP: beast-mcmc -- Bayesian MCMC analysis of molecular sequences
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
552101: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=552101
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Felix Feyertag <felix.feyertag@googlemail.com>


Source: beast-mcmc
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> 
DM-Upload-Allowed: yes
Uploaders: Felix Feyertag <felix.feyertag@googlemail.com>
Build-Depends: debhelper (>= 7)
Standards-Version: 3.8.0
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/beast-mcmc/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/beast-mcmc/trunk/ 
XS-Autobuild: yes
Homepage: http://beast.bio.ed.ac.uk/

Package: beast-mcmc
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: Bayesian MCMC analysis of molecular sequences
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
can be used as a method of reconstructing phylogenies but is also a
framework for testing evolutionary hypotheses without conditioning on a
single tree topology. BEAST uses MCMC to average over tree space, so that
each tree is weighted proportional to its posterior probability. Included
is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
.
When publishing results using this software please cite:
Drummond AJ, Rambaut A (2007) "BEAST: Bayesian evolutionary analysis by
sampling trees." BMC Evolutionary Biology 7:214



Name: BEAST-MCMC
Source: http://beast-mcmc.googlecode.com/svn/trunk/

Copyright: © 2002-2006 Alexei Drummond and Andrew Rambaut
License: LGPL-2
BEAST is distributed under the terms of the GNU Lesser General Public License. See the notice in individual files and the file LICENSE for licensing details.
On a Debian GNU/Linux system, the GNU Lesser GPL license version 2 is included 
in the file ‘/usr/share/common-licenses/LGPL-2’, and the GNU GPL license
version 2 is included in the file ‘/usr/share/common-licenses/GPL-2’.

License: other

BEAST includes software libraries from projects whose licensing
terms require that the following notices be included when they are
distributed in binary form and that the recipient be given a copy of
their respective licenses.

This product includes software developed by the
JDOM Project (http://www.jdom.org/)

This product includes software developed by
The Apache Software Foundation (http://www.apache.org/)

The license for JDOM can be read in the LICENSE.txt file in the
source distribution available at http://www.jdom.org/

The license for the Commons Math library can be read at
http://www.apache.org/licenses/LICENSE-2.0 or in the LICENSE.txt file
in the source distribution available at
http://jakarta.apache.org/commons/math/

--- End Message ---
--- Begin Message --- 
Source: beast-mcmc
Source-Version: 1.6.2-1

We believe that the bug you reported is fixed in the latest version of
beast-mcmc, which is due to be installed in the Debian FTP archive:

beast-doc_1.6.2-1_all.deb
  to contrib/b/beast-mcmc/beast-doc_1.6.2-1_all.deb
beast-examples_1.6.2-1_all.deb
  to contrib/b/beast-mcmc/beast-examples_1.6.2-1_all.deb
beast-mcmc-lib_1.6.2-1_amd64.deb
  to contrib/b/beast-mcmc/beast-mcmc-lib_1.6.2-1_amd64.deb
beast-mcmc_1.6.2-1.debian.tar.gz
  to contrib/b/beast-mcmc/beast-mcmc_1.6.2-1.debian.tar.gz
beast-mcmc_1.6.2-1.dsc
  to contrib/b/beast-mcmc/beast-mcmc_1.6.2-1.dsc
beast-mcmc_1.6.2-1_all.deb
  to contrib/b/beast-mcmc/beast-mcmc_1.6.2-1_all.deb
beast-mcmc_1.6.2.orig.tar.xz
  to contrib/b/beast-mcmc/beast-mcmc_1.6.2.orig.tar.xz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 552101@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated beast-mcmc package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


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Hash: SHA1

Format: 1.8
Date: Tue, 05 Jun 2012 14:38:11 +0200
Source: beast-mcmc
Binary: beast-mcmc beast-mcmc-lib beast-examples beast-doc
Architecture: source all amd64
Version: 1.6.2-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description: 
 beast-doc  - Bayesian MCMC phylogenetic inference - documentation
 beast-examples - Bayesian MCMC phylogenetic inference - example data
 beast-mcmc - Bayesian MCMC phylogenetic inference
 beast-mcmc-lib - Bayesian MCMC phylogenetic inference
Closes: 552101
Changes: 
 beast-mcmc (1.6.2-1) unstable; urgency=low
 .
   * Initial release. (Closes: #552101)
Checksums-Sha1: 
 586832eda475f5370cce5dedb2f57497d1e159d3 1846 beast-mcmc_1.6.2-1.dsc
 ff56617c5fcb58900d1d66a3363b27f640c204fa 6175384 beast-mcmc_1.6.2.orig.tar.xz
 bd83e7b74c1a512515453ba03b2ca455503b6ed5 20025 beast-mcmc_1.6.2-1.debian.tar.gz
 8f184930cd3a1851df128603b5872f63545edd61 5676610 beast-mcmc_1.6.2-1_all.deb
 9e7a8c96eaf045e5b27d4e87a22085d26aa832f3 33494 beast-mcmc-lib_1.6.2-1_amd64.deb
 3e6c1e866a9bacd4f01b018d2dc4bf4e3636c624 987162 beast-examples_1.6.2-1_all.deb
 6814b04f09e9a593ec60f96766a447367f76096a 3804878 beast-doc_1.6.2-1_all.deb
Checksums-Sha256: 
 bbab5ad8d47a57f5187ce5f149027dc016b8cbf8a6567895bdec7149e3fe22e1 1846 beast-mcmc_1.6.2-1.dsc
 3922f5f92d9f16275b02d01b261dbd911a6468845f8c6ff0fcba6192c5bd33b8 6175384 beast-mcmc_1.6.2.orig.tar.xz
 80cc07e43829d64eabafb9542ac8c6e140af83045203c6fca3c2d46180da5dbf 20025 beast-mcmc_1.6.2-1.debian.tar.gz
 b4ab21c1280ef0d3611c22a1ea5d089ec6cf9fe2fcdbc080843b94671efd64e4 5676610 beast-mcmc_1.6.2-1_all.deb
 cc62ebc2d532f8989a7dc8f5fd6239c551ca60d846495927711437b0510e1f40 33494 beast-mcmc-lib_1.6.2-1_amd64.deb
 19068a865bb2e919186123c202b7d4980f376cfd6e441114c557a7b3e83c6dae 987162 beast-examples_1.6.2-1_all.deb
 ef9a6bbb64e0087924768dc385bbbbaa81dbde26d0181f2681d0607082b06462 3804878 beast-doc_1.6.2-1_all.deb
Files: 
 04c57c11052ebd93a423e217154837da 1846 contrib/science optional beast-mcmc_1.6.2-1.dsc
 5ec7e1ce642fdd2a7f66d90d6b32401f 6175384 contrib/science optional beast-mcmc_1.6.2.orig.tar.xz
 825b39aa07e3f04ec9113b9dc4da9cd8 20025 contrib/science optional beast-mcmc_1.6.2-1.debian.tar.gz
 166fe20b4580fea851271f8177af11db 5676610 contrib/science optional beast-mcmc_1.6.2-1_all.deb
 a62d5f11e1f2784be24d854943365a4e 33494 contrib/science optional beast-mcmc-lib_1.6.2-1_amd64.deb
 0ef73c72bd4f12bb827c466fb6dd42da 987162 contrib/doc optional beast-examples_1.6.2-1_all.deb
 06eea5ffc630997f1091eca77af77b9a 3804878 contrib/doc optional beast-doc_1.6.2-1_all.deb

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