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Bug#656626: marked as done (ITP: hhsuite -- sensitive protein sequence searching based on HMM-HMM alignment)

Your message dated Tue, 06 Mar 2012 12:02:54 +0000
with message-id <E1S4t6U-0001Em-GL@franck.debian.org>
and subject line Bug#656626: fixed in hhsuite 2.0.12-1
has caused the Debian Bug report #656626,
regarding ITP: hhsuite -- sensitive protein sequence searching based on HMM-HMM alignment
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
656626: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=656626
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan <lkajan@rostlab.org>

* Package name    : hhsuite
  Version         : 2.0.4
  Upstream Author : Johannes Soeding, Michael Remmert, Andreas Hauser <hauser@genzentrum.lmu.de>, Andreas Biegert
* URL             : http://toolkit.genzentrum.lmu.de/sections/search
* License         : GPLv3
  Programming Lang: C++
  Description     : sensitive protein sequence searching based on HMM-HMM alignment

The HH-suite is an open-source software package for sensitive protein sequence searching based on the
pairwise alignment of hidden Markov models (HMMs). It contains HHsearch and HHblits
among other programs and utilities.
.
HHsearch takes as input a multiple sequence alignment (MSA)
or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
proteins. HHsearch is often used for protein structure prediction to detect homologous templates
and to build highly accurate query-template pairwise alignments for homology modeling.
.
HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM
and, using an iterative search strategy, adds significantly similar sequences from the previous search
to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is
faster, up to twice as sensitive and produces more accurate alignments.

--- End Message ---
--- Begin Message --- 
Source: hhsuite
Source-Version: 2.0.12-1

We believe that the bug you reported is fixed in the latest version of
hhsuite, which is due to be installed in the Debian FTP archive:

hhsuite-data_2.0.12-1_all.deb
  to main/h/hhsuite/hhsuite-data_2.0.12-1_all.deb
hhsuite-dbg_2.0.12-1_amd64.deb
  to main/h/hhsuite/hhsuite-dbg_2.0.12-1_amd64.deb
hhsuite_2.0.12-1.debian.tar.gz
  to main/h/hhsuite/hhsuite_2.0.12-1.debian.tar.gz
hhsuite_2.0.12-1.dsc
  to main/h/hhsuite/hhsuite_2.0.12-1.dsc
hhsuite_2.0.12-1_amd64.deb
  to main/h/hhsuite/hhsuite_2.0.12-1_amd64.deb
hhsuite_2.0.12.orig.tar.gz
  to main/h/hhsuite/hhsuite_2.0.12.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 656626@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Laszlo Kajan <lkajan@rostlab.org> (supplier of updated hhsuite package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Wed, 22 Feb 2012 10:03:00 +0100
Source: hhsuite
Binary: hhsuite hhsuite-data hhsuite-dbg
Architecture: source amd64 all
Version: 2.0.12-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Laszlo Kajan <lkajan@rostlab.org>
Description: 
 hhsuite    - sensitive protein sequence searching based on HMM-HMM alignment
 hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment (
 hhsuite-dbg - sensitive protein sequence searching based on HMM-HMM alignment (
Closes: 656626
Changes: 
 hhsuite (2.0.12-1) unstable; urgency=low
 .
   * Initial release (Closes: #656626)
Checksums-Sha1: 
 0d3eb545ad458b052ec14345c6888aa6dd626701 1477 hhsuite_2.0.12-1.dsc
 4a7e7ab545dac1e74c80033e445dd487da58d6b3 3303621 hhsuite_2.0.12.orig.tar.gz
 37428e4ff83fffffe4e6bc39c746cae8eb9e55cc 8345 hhsuite_2.0.12-1.debian.tar.gz
 26d0cd655c62d6edbcfdc29eccc5fd8b3da162d1 1465168 hhsuite_2.0.12-1_amd64.deb
 8f89d9b268c067e49d0f06bbec1d79598b2f1915 2521826 hhsuite-data_2.0.12-1_all.deb
 34a0dd6e732805947b9648c51057d51d13f212bb 92962 hhsuite-dbg_2.0.12-1_amd64.deb
Checksums-Sha256: 
 9949360406e29cee08d0c42021ad00941ee60ee31e67cb5fe5492087edb026a2 1477 hhsuite_2.0.12-1.dsc
 75dfdbaf0c3bbb05dcd179bf33482d2f8b6b638e0795fa07ea626439926494c2 3303621 hhsuite_2.0.12.orig.tar.gz
 f1e6e51e1ae7c2c939f4bf018d8ee670faf1fafe53ba93331741ca2fa8472de0 8345 hhsuite_2.0.12-1.debian.tar.gz
 39dc828ce48bea9698db491762f97c46df1b9beedfda2822859f7249e4525956 1465168 hhsuite_2.0.12-1_amd64.deb
 9398ab2e6dc9d0ff45972b5842a425d973a3504daceb5c46c706bf4261bac3a5 2521826 hhsuite-data_2.0.12-1_all.deb
 017bd82c5f6c4732928a24d5d0e4f7e3c3e5ee4671742490d76e3b3c4474f468 92962 hhsuite-dbg_2.0.12-1_amd64.deb
Files: 
 e446c378105ef9d12744c306a824051c 1477 science extra hhsuite_2.0.12-1.dsc
 c448a6e423d88ee94918060d12a7df04 3303621 science extra hhsuite_2.0.12.orig.tar.gz
 48967bc8a9084c4254e707c8c2a17872 8345 science extra hhsuite_2.0.12-1.debian.tar.gz
 5e499664beafecf73f74d0678baf1ad4 1465168 science extra hhsuite_2.0.12-1_amd64.deb
 9a3e1611bf3673ba10336bd87fb87843 2521826 science extra hhsuite-data_2.0.12-1_all.deb
 b52381dcd3c3b9a75a5a796181271158 92962 debug extra hhsuite-dbg_2.0.12-1_amd64.deb

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--- End Message ---
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