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Bug#660762: marked as done (ITP: bowtie2 -- ultrafast memory-efficient short read aligner)

Your message dated Sat, 03 Mar 2012 16:47:16 +0000
with message-id <E1S3s72-0004Eo-Do@franck.debian.org>
and subject line Bug#660762: fixed in bowtie2 2.0.0-beta5-1
has caused the Debian Bug report #660762,
regarding ITP: bowtie2 -- ultrafast memory-efficient short read aligner
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
660762: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=660762
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili <alex@biotec.tu-dresden.de>

* Package name    : bowtie2
  Version         : 2.0.0-beta5
  Upstream Author : Ben Langmead <blangmea@jhsph.edu>
* URL             : http://bowtie-bio.sourceforge.net/bowtie2/
* License         : GPL
  Programming Lang: C++, Perl
  Description     : ultrafast memory-efficient short read aligner

 is an ultrafast and memory-efficient tool for aligning sequencing reads
 to long reference sequences. It is particularly good at aligning reads
 of about 50 up to 100s or 1,000s of characters, and particularly good
 at aligning to relatively long (e.g. mammalian) genomes.
 .
 Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
 small: for the human genome, its memory footprint is typically
 around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

--- End Message ---
--- Begin Message --- 
Source: bowtie2
Source-Version: 2.0.0-beta5-1

We believe that the bug you reported is fixed in the latest version of
bowtie2, which is due to be installed in the Debian FTP archive:

bowtie2-examples_2.0.0-beta5-1_all.deb
  to main/b/bowtie2/bowtie2-examples_2.0.0-beta5-1_all.deb
bowtie2_2.0.0-beta5-1.debian.tar.gz
  to main/b/bowtie2/bowtie2_2.0.0-beta5-1.debian.tar.gz
bowtie2_2.0.0-beta5-1.dsc
  to main/b/bowtie2/bowtie2_2.0.0-beta5-1.dsc
bowtie2_2.0.0-beta5-1_amd64.deb
  to main/b/bowtie2/bowtie2_2.0.0-beta5-1_amd64.deb
bowtie2_2.0.0-beta5.orig.tar.bz2
  to main/b/bowtie2/bowtie2_2.0.0-beta5.orig.tar.bz2



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 660762@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Alexandre Mestiashvili <alex@biotec.tu-dresden.de> (supplier of updated bowtie2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Wed, 22 Feb 2012 11:03:03 +0100
Source: bowtie2
Binary: bowtie2 bowtie2-examples
Architecture: source amd64 all
Version: 2.0.0-beta5-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
Description: 
 bowtie2    - ultrafast memory-efficient short read aligner
 bowtie2-examples - Examples for bowtie2,
Closes: 660762
Changes: 
 bowtie2 (2.0.0-beta5-1) unstable; urgency=low
 .
   [ Alexandre Mestiashvili ]
   * Initial release (Closes: #660762)
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