Bug#629597: marked as done (ITP: bedtools -- suite of utilities for comparing genomic features)
Your message dated Wed, 08 Jun 2011 10:47:09 +0000
with message-id <E1QUGI1-0002wz-SL@franck.debian.org>
and subject line Bug#629597: fixed in bedtools 2.12.0-1
has caused the Debian Bug report #629597,
regarding ITP: bedtools -- suite of utilities for comparing genomic features
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
629597: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=629597
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>
Package name : bedtools
Version : 2.12.0
Upstream Author : Aaron Quinlan
URL : http://code.google.com/p/bedtools/
License : GPL-2+
Programming Lang: C++
Description : suite of utilities for comparing genomic features
The BEDTools utilities allow one to address common genomics tasks such as
finding feature overlaps and computing coverage. The utilities are largely
based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
BEDTools, one can develop sophisticated pipelines that answer complicated
research questions by streaming several BEDTools together.
BEDTools is very popular in its field and will be a nice addition to Debian. A
package is almost ready at http://git.debian.org/?p=debian-med/bedtools.git
Have a nice day,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
--- End Message ---
--- Begin Message ---
Source: bedtools
Source-Version: 2.12.0-1
We believe that the bug you reported is fixed in the latest version of
bedtools, which is due to be installed in the Debian FTP archive:
bedtools_2.12.0-1.debian.tar.gz
to main/b/bedtools/bedtools_2.12.0-1.debian.tar.gz
bedtools_2.12.0-1.dsc
to main/b/bedtools/bedtools_2.12.0-1.dsc
bedtools_2.12.0-1_amd64.deb
to main/b/bedtools/bedtools_2.12.0-1_amd64.deb
bedtools_2.12.0.orig.tar.bz2
to main/b/bedtools/bedtools_2.12.0.orig.tar.bz2
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 629597@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated bedtools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 08 Jun 2011 17:01:19 +0900
Source: bedtools
Binary: bedtools
Architecture: source amd64
Version: 2.12.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description:
bedtools - suite of utilities for comparing genomic features
Closes: 629597
Changes:
bedtools (2.12.0-1) unstable; urgency=low
.
* Initial release (Closes: #629597)
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Files:
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