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Bug#169859: marked as done (RFP: bioconductor -- Analysis of genomic data based on GNU R)

Your message dated Sun, 15 May 2011 13:02:58 +0000
with message-id <E1QLayI-0002hI-Sp@franck.debian.org>
and subject line Bug#169859: fixed in r-bioc-biobase 2.12.1-1
has caused the Debian Bug report #169859,
regarding RFP: bioconductor -- Analysis of genomic data based on GNU R
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)


-- 
169859: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=169859
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Version: N/A; reported 2002-11-20
Severity: wishlist

* Package name    : bioconductor
  Version         : 1.1
  Upstream Author : Robert Gentleman, A.J. Rossini, and Sandrine Dudoit <bioconductor@stat.math.ethz.ch>
* URL             : http://www.bioconductor.org/
* License         : GPL
  Description     : Analysis of genomic data based on GNU R

This package would be of interest for the Debian-Med project.

Version 1.1 features:
=====================

 * All packages from the 1.0 release are included. All current bug
   fixes have been applied, and most have upgraded and provide
   enhanced functionality. 
 * New packages and major upgrades for release 1.1: affy:
   read.MIAME, a widget for entering phenoData. expresso, a
   flexible function for computing expression measures as well as
   providing widgets to choose among options in the various steps
   of preprocessing. rma, a fast and efficient function to compute
   the multi-array average expression measure.
 * Biobase: vignette and openVignette, functions to give users
   greater interaction with package vignettes from the R command
   line.
 * graph: A new package that provides classes & tools to handle
   graph objects in R.
 * hexbin: A new package which includes binning functions, in
   particular hexagonal bins for graphing
 * marrayTools: A new package with miscellaneous functions use in
   the functional genomics core facility in UCB
 * reposTools: A new package that provides tools for dealing with
   file repositories, which allow users to easily install, update
   and distribute packages, vignettes and other files.
 * tkWidgets: vExplorer, a powerful tool designed to allow users to
   interact with vignette documentation in a hands on manner.
 * vsn: A new package providing calibration and variance
   stabilizing transformations for DNA array data.


-- System Information
Debian Release: 3.0
Architecture: i386
Kernel: Linux wr-linux02 2.4.17 #1 Mit Jan 23 14:00:21 CET 2002 i686
Locale: LANG=de_DE@euro, LC_CTYPE=de_DE@euro

--- End Message ---
--- Begin Message --- 
Source: r-bioc-biobase
Source-Version: 2.12.1-1

We believe that the bug you reported is fixed in the latest version of
r-bioc-biobase, which is due to be installed in the Debian FTP archive:

r-bioc-biobase_2.12.1-1.diff.gz
  to main/r/r-bioc-biobase/r-bioc-biobase_2.12.1-1.diff.gz
r-bioc-biobase_2.12.1-1.dsc
  to main/r/r-bioc-biobase/r-bioc-biobase_2.12.1-1.dsc
r-bioc-biobase_2.12.1-1_amd64.deb
  to main/r/r-bioc-biobase/r-bioc-biobase_2.12.1-1_amd64.deb
r-bioc-biobase_2.12.1.orig.tar.gz
  to main/r/r-bioc-biobase/r-bioc-biobase_2.12.1.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 169859@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated r-bioc-biobase package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 14 May 2011 22:35:11 +0900
Source: r-bioc-biobase
Binary: r-bioc-biobase
Architecture: source amd64
Version: 2.12.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description: 
 r-bioc-biobase - base functions for Bioconductor
Closes: 169859
Changes: 
 r-bioc-biobase (2.12.1-1) unstable; urgency=low
 .
   * Initial release (Closes: #169859)
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Files: 
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 893dc8abd60e3cebae58a000ffb15288 2222976 gnu-r optional r-bioc-biobase_2.12.1.orig.tar.gz
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