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Bug#614382: marked as done (ITP: transtermhp -- Finds rho-independent transcription terminators in bacterial genomes.)

Your message dated Sat, 09 Apr 2011 22:32:16 +0000
with message-id <E1Q8ghU-0003ci-SC@franck.debian.org>
and subject line Bug#614382: fixed in transtermhp 2.07-1
has caused the Debian Bug report #614382,
regarding ITP: transtermhp -- Finds rho-independent transcription terminators in bacterial genomes.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
614382: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614382
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Owner: Alex Mestiashvili <alex@biotec.tu-dresden.de>
Severity: wishlist

*** Please type your report below this line ***

* Package name    : transtermhp
  Version         : 2.0.7
  Upstream Author : Carl Kingsford
* URL             : http://transterm.cbcb.umd.edu/
* License         : GPL
  Programming Lang: C++
Description : Finds rho-independent transcription terminators in bacterial genomes. 
 TransTermHP finds rho-independent transcription terminators in
 bacterial genomes. Each terminator found by the program is assigned a
 confidence value that estimates its probability of being a true
 terminator. TransTermHP is described in:
 .
 C. Kingsford, K. Ayanbule and S.L. Salzberg. Rapid, accurate,
 computational discovery of Rho-independent transcription terminators
 illuminates their relationship to DNA uptake. Genome Biology 8:R22
 (2007).
 .
 A predecessor system, TransTerm, that used very different search and
 scoring algorithms is described in:
 .
 Maria D. Ermolaeva, Hanif G. Khalak, Owen White, Hamilton O. Smith and
 Steven L. Salzberg. Prediction of Transcription Terminators in Bacterial
 Genomes. J Mol Biol 301, (1), 27-33 (2000)

--- End Message ---
--- Begin Message --- 
Source: transtermhp
Source-Version: 2.07-1

We believe that the bug you reported is fixed in the latest version of
transtermhp, which is due to be installed in the Debian FTP archive:

transtermhp_2.07-1.debian.tar.gz
  to main/t/transtermhp/transtermhp_2.07-1.debian.tar.gz
transtermhp_2.07-1.dsc
  to main/t/transtermhp/transtermhp_2.07-1.dsc
transtermhp_2.07-1_amd64.deb
  to main/t/transtermhp/transtermhp_2.07-1_amd64.deb
transtermhp_2.07.orig.tar.gz
  to main/t/transtermhp/transtermhp_2.07.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 614382@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Alex Mestiashvili <alex@biotec.tu-dresden.de> (supplier of updated transtermhp package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Sat, 19 Feb 2011 12:36:10 +0000
Source: transtermhp
Binary: transtermhp
Architecture: source amd64
Version: 2.07-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Alex Mestiashvili <alex@biotec.tu-dresden.de>
Description: 
 transtermhp - find rho-independent transcription terminators in bacterial genom
Closes: 614382
Changes: 
 transtermhp (2.07-1) unstable; urgency=low
 .
   * Initial release (Closes: #614382)
Checksums-Sha1: 
 27af58ab698ce7ac05e30367d1a6df09d4222a86 1351 transtermhp_2.07-1.dsc
 d2a109501deee699633b01197946d5cc3fe16e16 70503 transtermhp_2.07.orig.tar.gz
 6af5b80a0a78657467fb36fd0846f5aff6ba43fa 11248 transtermhp_2.07-1.debian.tar.gz
 0916221dfc8cf0e36783c9f0e648660565bd83f5 167918 transtermhp_2.07-1_amd64.deb
Checksums-Sha256: 
 b5ef6e4bb47254ada32c3cbd8605bf893120e1c878b69beb368c674348f8e56c 1351 transtermhp_2.07-1.dsc
 1c5f5b648377ebf1d42e113c06fde6e199a81acf448af395b63c786eb28846fd 70503 transtermhp_2.07.orig.tar.gz
 ae038b930cf5fd54f0d853695e24ae603d19f435fa28b12a8b1fd86ce7cc395f 11248 transtermhp_2.07-1.debian.tar.gz
 b2eb19a0146f1802569997787b16e3922a9ff74795d3a992cd9508b87dbbe845 167918 transtermhp_2.07-1_amd64.deb
Files: 
 efce2e6dfe057c9165fcf786601adbab 1351 science optional transtermhp_2.07-1.dsc
 a8eb98a960129d7fa868e2a1ca5a49af 70503 science optional transtermhp_2.07.orig.tar.gz
 a385d74e0deab62ba026b3094fa91b82 11248 science optional transtermhp_2.07-1.debian.tar.gz
 8ad5bd9fa82424d443c090f16992e0dc 167918 science optional transtermhp_2.07-1_amd64.deb

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