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Bug#587189: marked as done (ITP: python-nast -- alignment of short DNA sequences)

Your message dated Sun, 01 Aug 2010 09:47:14 +0000
with message-id <E1OfV8U-00075g-5i@franck.debian.org>
and subject line Bug#587189: fixed in python-pynast 1.1-1
has caused the Debian Bug report #587189,
regarding ITP: python-nast -- alignment of short DNA sequences
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
587189: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=587189
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moeller@gmx.de>

* Package name    : python-nast
  Version         : 1.1
* URL             : http://pynast.sf.net
* License         : GPL
  Programming Lang: Python
  Description     : alignment of short DNA sequences

 The package provices a reimplementation of the Nearest Alignment 
 Space Termination tool in python. It was prepared for next generation
 sequencers.
 .
 Given a set of sequences and a template alignment, PyNAST will align the
 input sequences against the template alignment, and return a multiple
 sequence alignment which contains the same number of positions (or
 columns) as the template alignment. This facilitates the analysis of new
 sequences in the context of existing alignments, and additional data
 derived from existing alignments such as phylogenetic trees. Because
 any protein or nucleic acid sequences and template alignments can be
 provided, PyNAST is not limited to the analysis of 16s rDNA sequences.
 .
 Since version 1.1, PyNAST no longer exactly matches the output
 of the origianl NAST program. Instead it focuses on getting better
 alignments. Users who wish to exactly match the results of NAST should
 download PyNAST 1.0.
 .
 PyNAST: a flexible tool for aligning sequences to a template
 alignment. J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman,
 Todd Z. DeSantis, Gary L. Andersen, and Rob Knight. January 15, 2010,
 DOI 10.1093/bioinformatics/btp636. Bioinformatics 26: 266-267.

--- End Message ---
--- Begin Message --- 
Source: python-pynast
Source-Version: 1.1-1

We believe that the bug you reported is fixed in the latest version of
python-pynast, which is due to be installed in the Debian FTP archive:

python-pynast_1.1-1.debian.tar.gz
  to contrib/p/python-pynast/python-pynast_1.1-1.debian.tar.gz
python-pynast_1.1-1.dsc
  to contrib/p/python-pynast/python-pynast_1.1-1.dsc
python-pynast_1.1-1_all.deb
  to contrib/p/python-pynast/python-pynast_1.1-1_all.deb
python-pynast_1.1.orig.tar.gz
  to contrib/p/python-pynast/python-pynast_1.1.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 587189@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sri Girish Srinivasa Murthy <srigirish@evolbio.mpg.de> (supplier of updated python-pynast package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Sun, 25 Jul 2010 22:21:11 +0200
Source: python-pynast
Binary: python-pynast
Architecture: source all
Version: 1.1-1
Distribution: experimental
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Sri Girish Srinivasa Murthy <srigirish@evolbio.mpg.de>
Description: 
 python-pynast - alignment of short DNA sequences
Closes: 587189
Changes: 
 python-pynast (1.1-1) experimental; urgency=low
 .
   * Initial release (Closes: #587189)
Checksums-Sha1: 
 3ac14dfde41193067e1b172e024dc73ae4ecacf4 1453 python-pynast_1.1-1.dsc
 ca79b852930c195c9c43d3fc979481301f1b229f 116488 python-pynast_1.1.orig.tar.gz
 b49aa660134726787f9ed42fd2d5289ecb9a0e74 2393 python-pynast_1.1-1.debian.tar.gz
 a8907df11e939017832127691e3c83f108b997d6 107524 python-pynast_1.1-1_all.deb
Checksums-Sha256: 
 8d1f93ca4ad310e8890a3a096452d5fc8a37098c0cd7a6b25707b331c8e91c70 1453 python-pynast_1.1-1.dsc
 8981bca1edc02e40cd4704599e6c071dbe9353b64082180bc5f8166ad568f95b 116488 python-pynast_1.1.orig.tar.gz
 df3a8e7c992aa0a004293fcb7ffd809ff7e70096579fb148a9bedaa555707d1e 2393 python-pynast_1.1-1.debian.tar.gz
 5723cd0619bae96b3b9c383cb15a6ec7cf9e17a6e511967afa347588cac6ff9e 107524 python-pynast_1.1-1_all.deb
Files: 
 184e9e80da8186731d0078687f9fccf0 1453 contrib/python extra python-pynast_1.1-1.dsc
 5eb6a4433504956a004d5a7e951f71a5 116488 contrib/python extra python-pynast_1.1.orig.tar.gz
 fb53a25db13e4eb0713e128a80e91d6a 2393 contrib/python extra python-pynast_1.1-1.debian.tar.gz
 eba313843e72ec13aca38a77f9dae7e4 107524 contrib/python extra python-pynast_1.1-1_all.deb

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