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Bug#468760: marked as done (ITP: libace-perl -- interface for the AceDB database)

Your message dated Fri, 06 Mar 2009 23:53:53 +0000
with message-id <E1LfjrV-0006Ui-BI@ries.debian.org>
and subject line Bug#468760: fixed in libace-perl 1.92-1
has caused the Debian Bug report #468760,
regarding ITP: libace-perl -- interface for the AceDB database
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
468760: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=468760
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Dear all,

Recent versions of Bioperl, a suite of perl modules for
bioinformatics, depend on the modules provided by AcePerl. The
Debian-Med packaging team would be very happy to find a volunteer to
prepare a Debian package for it. We can provide support and
sponsorship (but please check first with the pkg-perl team if they
would be interested to host the package as well).

There might be copyright issues depending on the level of pickyness:
files under acelib/ have no clear copyright statement, but have been
released under GPL and LGPL in the ACEDB packages distributed by the
Sanger Center (see below). I do not know if these files are essential.

  Package name    : libace-perl
  Version         : 1.91
  Upstream Author : Lincoln Stein lstein@cshl.org
  URL             : http://stein.cshl.org/AcePerl/
  License         : Same as Perl., and GPL/LGPL mix.
  Programming Lang: Perl, C
  Description     : interface for the AceDB database

Here are stubs for the control and copyright files:

Priority: optional
Section: science
Homepage: interface for the AceDB database

Enhances: bioperl
Description: interface for the AceDB database
 AcePerl is an object-oriented Perl interface for the AceDB
 database. It provides functionality for connecting to remote AceDB
 databases, performing queries, fetching ACE objects, and updating
 databases. The programmer's API is compatible with the JADE Java API,
 and interoperable with the API used by BoulderIO.
 .
 AceDB is a genome database system developed since 1989 primarily by
 Jean Thierry-Mieg (CNRS, Montpellier) and Richard Durbin (Sanger
 Institute). It was originally developed for the C.elegans genome
 project , from which its name was derived (A C. elegans DataBase).


X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
X-Upstream-Author: Lincoln Stein <lstein@cshl.org>
X-Source-Downloaded-From: http://stein.cshl.org/AcePerl/AcePerl.tar.gz

Files: acelib/*
Copyright: © 1991-1998 J Thierry-Mieg and R Durbin
License: Probably a mixture of GPL-2+ and LGPL-2+
 This file is part of the ACEDB genome database package, written by
 Richard Durbin (Sanger Centre, UK) rd@sanger.ac.uk, and
 Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.crbm.cnrs-mop.fr
X-Comment: These files can be found licenced either as GPL-2+ or LGPL-2+
 in ftp://ftp.sanger.ac.uk/pub/acedb/SUPPORTED/ACEDB-source.4.9.39.tar.gz

Files: Ace/Model.pm, Ace/Object.pm, Ace/Local.pm, Ace/Sequence/Multi.pm, Ace/Sequence/Homol.pm, Ace/Sequence/GappedAlignment.pm, Ace/Sequence/FeatureList.pm, Ace/Sequence/Feature.pm, Ace/Sequence/Gene.pm, Ace/Sequence/Transcript.pm, Ace/Sequence.pm
Copyright: © 1997-1999 Lincoln D. Stein 
License: GPL-1+ | Artistic
 (see below)

Files: *
Copyright: © 1998 Cold Spring Harbor Laboratory
License: GPL-1+ | Artistic
 This library is free software; you can redistribute it and/or modify
 it under the same terms as Perl itself.  See the Artistic License file
 in the main Perl distribution for specific terms and conditions of
 use.  In addition, the following disclaimers apply:
 .
 CSHL makes no representations whatsoever as to the SOFTWARE contained
 herein.  It is experimental in nature and is provided WITHOUT WARRANTY
 OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER
 WARRANTY, EXPRESS OR IMPLIED.  CSHL MAKES NO REPRESENTATION OR
 WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
 OTHER PROPRIETARY RIGHT.
 .
 By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
 against any loss, claim, damage or liability, of whatsoever kind or
 nature, which may arise from your Institution's respective use,
 handling or storage of the SOFTWARE.
 .
 If publications result from research using this SOFTWARE, we ask that
 CSHL be acknowledged and/or credit be given to CSHL scientists, as
 scientifically appropriate.
X-Comment: On Debian systems, the complete text of the GNU General
 Public License can be found in `/usr/share/common-licenses/GPL'.
X-Comment: On Debian systems, the complete text of the Artistic
 license can be found in `/usr/share/common-licenses/Artistic'.

--- End Message ---
--- Begin Message --- 
Source: libace-perl
Source-Version: 1.92-1

We believe that the bug you reported is fixed in the latest version of
libace-perl, which is due to be installed in the Debian FTP archive:

libace-perl_1.92-1.diff.gz
  to pool/main/liba/libace-perl/libace-perl_1.92-1.diff.gz
libace-perl_1.92-1.dsc
  to pool/main/liba/libace-perl/libace-perl_1.92-1.dsc
libace-perl_1.92-1_powerpc.deb
  to pool/main/liba/libace-perl/libace-perl_1.92-1_powerpc.deb
libace-perl_1.92.orig.tar.gz
  to pool/main/liba/libace-perl/libace-perl_1.92.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 468760@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated libace-perl package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Mon, 10 Nov 2008 14:18:23 +0900
Source: libace-perl
Binary: libace-perl
Architecture: source powerpc
Version: 1.92-1
Distribution: unstable
Urgency: low
Maintainer: Charles Plessy <plessy@debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description: 
 libace-perl - Object-Oriented Access to ACEDB Databases
Closes: 468760
Changes: 
 libace-perl (1.92-1) unstable; urgency=low
 .
   * Initial Release (Closes: #468760).
Checksums-Sha1: 
 eb262ecf1e59b0fa82ba1c54b5889347599cce4c 1035 libace-perl_1.92-1.dsc
 2d6d09f18a17737eb6170da5e261d6eb35770fcb 300163 libace-perl_1.92.orig.tar.gz
 a6724ca934ccd46630575f5a04ee214639fe1e83 3609 libace-perl_1.92-1.diff.gz
 b4a1ef98d49d2ee8205fdb86e802e7ff95fcf9d5 354500 libace-perl_1.92-1_powerpc.deb
Checksums-Sha256: 
 233fe088143d5b88b152f954d791c8fdb82b5024b9c064d0c5d93f925cfd3db5 1035 libace-perl_1.92-1.dsc
 2c97ca2be3b859e4a3bc35d706da9829a30aead0206e43f00d0136d995ae783c 300163 libace-perl_1.92.orig.tar.gz
 eba310bb0cb323a1593f4ec35ae8d58719db55c9ab52b20bd5bab08e195e9a15 3609 libace-perl_1.92-1.diff.gz
 faf72377ce5fed7d47bc0243e25e5ce1fc6e7a08cf1090b5b0c9129bf336c052 354500 libace-perl_1.92-1_powerpc.deb
Files: 
 8e6ddb2d0656bddd6d9e17fc311ad008 1035 perl optional libace-perl_1.92-1.dsc
 485e54655a15d8dc5c471fed07092414 300163 perl optional libace-perl_1.92.orig.tar.gz
 27bc63b39cae83421f4d93ae0f958780 3609 perl optional libace-perl_1.92-1.diff.gz
 00032655cdfe237d8dba9e35b7deac81 354500 perl optional libace-perl_1.92-1_powerpc.deb

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