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Bug#487026: marked as done (ITP: velvet -- Sequence assembler for very short reads)

Your message dated Fri, 06 Mar 2009 23:21:00 +0000
with message-id <E1LfjLg-0002Rm-UI@ries.debian.org>
and subject line Bug#487026: fixed in velvet 0.7.24-1
has caused the Debian Bug report #487026,
regarding ITP: velvet -- Sequence assembler for very short reads
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org

487026: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=487026
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

  Package name    : velvet
  Version         : 0.6.03
  Upstream Author : Daniel Zerbino
  URL             : http://www.ebi.ac.uk/~zerbino/velvet/
  License         : GPL-2+
  Programming Lang: C
  Description     : Sequence assembler for very short reads

 Velvet is a de novo genomic assembler specially designed for short read
 sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
 Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
 Cambridge, in the United Kingdom.
 Velvet currently takes in short read sequences, removes errors then produces
 high quality unique contigs. It then uses paired read information, if
 available, to retrieve the repeated areas between contigs.
 Velvet was published in: `Velvet: algorithms for de novo short read assembly
 using de Bruijn graphs.  D.R. Zerbino and E. Birney. Genome Research

The executables from this package are named `velveth' and `velvetg', so there
is no risk of namespace pollution. Despite the package being GPL-2+, there are
DFSG issues to deal with, at least a PDF with missing source. A private
preliminary package that I made for work is available upon request. Unless
somebody asks for fast-tracking, a final version will probably not be uploaded
before the Lenny release.

Have a nice day,

Charles Plessy
Tsurumi, Kanagawa, Japan

--- End Message ---
--- Begin Message ---
Source: velvet
Source-Version: 0.7.24-1

We believe that the bug you reported is fixed in the latest version of
velvet, which is due to be installed in the Debian FTP archive:

  to pool/main/v/velvet/velvet-example_0.7.24-1_all.deb
  to pool/main/v/velvet/velvet_0.7.24-1.diff.gz
  to pool/main/v/velvet/velvet_0.7.24-1.dsc
  to pool/main/v/velvet/velvet_0.7.24-1_amd64.deb
  to pool/main/v/velvet/velvet_0.7.24.orig.tar.gz

A summary of the changes between this version and the previous one is

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 487026@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
Charles Plessy <plessy@debian.org> (supplier of updated velvet package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)

Hash: SHA1

Format: 1.8
Date: Wed, 09 Jul 2008 14:06:55 +0900
Source: velvet
Binary: velvet velvet-example
Architecture: source all amd64
Version: 0.7.24-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
 velvet     - Nucleic acid sequence assembler for very short reads
 velvet-example - Example data for the Velvet sequence assembler
Closes: 487026
 velvet (0.7.24-1) unstable; urgency=low
   * Initial release (Closes: #487026)
 d0d2e4290b21f081abe33e4b1e2be6846f6d80fe 1339 velvet_0.7.24-1.dsc
 f857d65705756db7e3ab6209258c34616bb4b450 3419303 velvet_0.7.24.orig.tar.gz
 434e904037ffd57c8164e8eac83d8132a6bd4275 3243 velvet_0.7.24-1.diff.gz
 0560ab5dfed1a87ba9e602abd613a697dc2799c0 2184512 velvet-example_0.7.24-1_all.deb
 860d81095154dc83cf6d367799c469c9b4faf1d3 440754 velvet_0.7.24-1_amd64.deb
 554ac860593f5414faff28048a2d0bcbe1ced2523d539fbfc813cb99b75150d4 1339 velvet_0.7.24-1.dsc
 b02b9d541d79075e29058332a0a034b64b927f005883f0ada934cba39e8da898 3419303 velvet_0.7.24.orig.tar.gz
 f968f1a81638a9846bc24d8e3179e8b47c0a761ea832700f79833020bda88269 3243 velvet_0.7.24-1.diff.gz
 4864dcd6b93911414962bb706a9396e0f9651c19416de7948545d0b9d394bbbd 2184512 velvet-example_0.7.24-1_all.deb
 04ccfea3d233846d64e1c2e8c87224440c6dc9d88af76abbb79f1f2e8577b0dd 440754 velvet_0.7.24-1_amd64.deb
 82ab39ef867c73c9d03fa3f421fc8eb4 1339 science optional velvet_0.7.24-1.dsc
 22ecbba20936d4622b39c8d6cecbd0f4 3419303 science optional velvet_0.7.24.orig.tar.gz
 78deb8656554072b1c87ddd210ef612a 3243 science optional velvet_0.7.24-1.diff.gz
 18c67c18b8ab38a329849fb984c487ac 2184512 science optional velvet-example_0.7.24-1_all.deb
 fb63e402dbf918edd6a5906d65916d41 440754 science optional velvet_0.7.24-1_amd64.deb

Version: GnuPG v1.4.9 (GNU/Linux)


--- End Message ---

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