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Bug#498562: marked as done (ITP: last-align -- genome-scale comparison of biological sequences.)

Your message dated Sat, 13 Dec 2008 16:20:24 +0000
with message-id <E1LBXE8-0003uc-1d@ries.debian.org>
and subject line Bug#498562: fixed in last-align 31-1
has caused the Debian Bug report #498562,
regarding ITP: last-align -- genome-scale comparison of biological sequences.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
498562: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=498562
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>

  Package name    : last-align
  Version         : 7
  Upstream Author : Martin C. Frith and Paul B. Horton <last@cbrc.jp>
  URL             : http://last.cbrc.jp/
  License         : GPL-3+
  Programming Lang: C++
  Description     : genome-scale comparison of biological sequences.
 
 LAST is software for comparing and aligning sequences, typically DNA or
 protein sequences. LAST is similar to BLAST, but it copes better with very
 large amounts of sequence data. Here are two things LAST is good at:
 .
  * Comparing large (e.g. mammalian) genomes.
  * Mapping lots of sequence tags onto a genome.
 .
 The main technical innovation is that LAST finds initial matches based on
 their multiplicity, instead of using a fixed size (e.g. BLAST uses 11-mers).
 This allows us to map tags to genomes without repeat-masking, without becoming
 overwhelmed by repetitive hits. To find these variable-sized matches, it uses
 a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
 discontiguous suffix array, analogous to spaced seeds.

The package is almost ready, but I will wait that GCC 4.3 issues are solved
upstream. Manpages are missing and I will not write some during the freeze.

This package will be part of a larger effort to make Debian the best platform
for large-scale genomics.

Have a nice day,

-- 
Charles

--- End Message ---
--- Begin Message --- 
Source: last-align
Source-Version: 31-1

We believe that the bug you reported is fixed in the latest version of
last-align, which is due to be installed in the Debian FTP archive:

last-align_31-1.diff.gz
  to pool/main/l/last-align/last-align_31-1.diff.gz
last-align_31-1.dsc
  to pool/main/l/last-align/last-align_31-1.dsc
last-align_31-1_amd64.deb
  to pool/main/l/last-align/last-align_31-1_amd64.deb
last-align_31.orig.tar.gz
  to pool/main/l/last-align/last-align_31.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 498562@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <plessy@debian.org> (supplier of updated last-align package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Thu, 13 Nov 2008 15:44:31 +0900
Source: last-align
Binary: last-align
Architecture: source amd64
Version: 31-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy@debian.org>
Description: 
 last-align - genome-scale comparison of biological sequences
Closes: 498562
Changes: 
 last-align (31-1) unstable; urgency=low
 .
   * Initial release (Closes: #498562)
Checksums-Sha1: 
 be261cd67739913b5c3bf72529af46951acf7711 1259 last-align_31-1.dsc
 1588eaa3471b1a9816cef28f63e6a13492d58dd2 95242 last-align_31.orig.tar.gz
 7c958ba542d74182b33d34d48af1da9908a1c51b 2744 last-align_31-1.diff.gz
 534e10ecc9b27b25a2a98b4798d6413eed97820a 167536 last-align_31-1_amd64.deb
Checksums-Sha256: 
 eaa07ab6a468ede6783157a4c3404f60078a1314f5bba867b2b61c7e1ebb3dc4 1259 last-align_31-1.dsc
 ad6fa831ee34a997c72da0077b4606b486764deb68dfa9678960f853a81c6d6b 95242 last-align_31.orig.tar.gz
 cc9069cb8d1221892df6c349104a3060bfbf1f02dbb04d644fd046b2ab003080 2744 last-align_31-1.diff.gz
 6ce68f76d12451a5cf3a811254f9c650a1daa30a7027c31f03654a4907af3a17 167536 last-align_31-1_amd64.deb
Files: 
 e690390d300b8fb77a7d6cb749c8b5f3 1259 science optional last-align_31-1.dsc
 ed16e0265c69a75b8da896705c04e233 95242 science optional last-align_31.orig.tar.gz
 2d149202473d77e18de409a7d78fec32 2744 science optional last-align_31-1.diff.gz
 e834c657228ac24367cea990356b9a6a 167536 science optional last-align_31-1_amd64.deb

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