--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: phylowin -- Graphical interface for molecular phylogenetic inference
- From: Charles Plessy <charles-debian-nospam@plessy.org>
- Date: Sat, 28 Oct 2006 11:33:51 +0900
- Message-id: <20061028023351.3131.26222.reportbug@sorbet.igloo>
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>
Package name : phylowin
Version : 25.09.2006
Upstream Author : Nicolas GALTIER <galtier@biomserv.univ-lyon1.fr> and Manolo GOUY
URL : http://pbil.univ-lyon1.fr/software/phylowin.html
License : Not found on the website
Description : Graphical interface for molecular phylogenetic inference
Phylo_win is a graphical colour interface for molecular phylogenetic
inference. It performs neighbor-joining, parsimony and maximum
likelihood methods and bootstrap with any of them. Many distances can be
used including Jukes & Cantor, Kimura, Tajima & Nei, HKY, Galtier & Gouy
(1995), LogDet for nucleotidic sequences, Poisson correction for protein
sequences, Ka and Ks for codon sequences. Species and sites to include
in the analysis are selected by mouse. Reconstructed trees can be drawn,
edited, printed, stored and evaluated according to numerous criteria.
.
Homepage: http://pbil.univ-lyon1.fr/software/phylowin.html
One of the authors asked me if I could package Phylo_win for Debian.
After inspecting the sources, I figured out that this program uses
sources files from the Phylip program, which frobids its use for profit.
Therfore, Phylo_win will unfortunately have to be distributed in
"non-free", oustide of Debian. I will nevertheless contact the author(s)
of the derived source files and ask if they are willing to give an
exemption for Phylo_win.
Phylo_win will depend on Vibrant (ncbi-tools6) and lesstif.
--
Charles Plessy
Wako, Saitama, Japan
Debian-Med packaging team
-- System Information:
Debian Release: testing/unstable
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing')
Architecture: powerpc (ppc64)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.16farm
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
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--- Begin Message ---
Hello,
This is an automatic mail sent to close the ITP you have reported or
are involved with.
Your ITP wnpp bug is being closed because of the following reasons:
- It is, as of today, older than 365 days.
- It hasn't had any activity recently.
As this is an automatic procedure, it could of course have something
wrong and probably it would be closing some bugs that are not
intended by owners and submitters (like you) to be closed, for
example if the ITP is still of your interest, or there has been
some kind of activity around it. In that case, please reopen the
bug, do it, DO IT NOW! (I don't want to be blamed because of
mass closing and not let people know that they can easily reopen
their bugs ;-).
To re-open it, you simply have to mail control@bugs.debian.org
with a body text like this:
reopen 395840
stop
Further comments on the work done in the bug sent to
395840@bugs.debian.org would be truly welcomed.
Anyway, if you have any kind of problems when dealing with
the BTS, feel free to contact me and I'd be more than happy to help
you on this: <damog@debian.org>.
A similar process is being applied to other kind of wnpp bugs.
Thanks for your cooperation,
-- David Moreno Garza <damog@debian.org>.
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