Bug#406286: ITP: sibsim4 -- align expressed RNA sequences on a DNA template

["Nelson A. de Oliveira" <naoliv@debian.org>]

Package: wnpp
Severity: wishlist
Owner: "Nelson A. de Oliveira" <naoliv@debian.org>

* Package name    : sibsim4
  Version         : 0.14
  Upstream Author : Christian Iseli <Christian.Iseli@licr.org>
* URL             : http://sibsim4.sourceforge.net/
* License         : GNU GPL
  Programming Lang: C
  Description     : align expressed RNA sequences on a DNA template

 The SIBsim4 project is based on sim4, which is a program designed to align
 an expressed DNA sequence with a genomic sequence, allowing for introns.
 SIBsim4 is a fairly extensive rewrite of the original code with the following
 goals:
  * speed improvement;
  * allow large, chromosome scale, DNA sequences to be used;
  * provide more detailed output about splice types;
  * provide more detailed output about polyA sites;
  * misc code cleanups and fixes

-- System Information:
Debian Release: 4.0
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/dash
Kernel: Linux 2.6.19-beyond2
Locale: LANG=pt_BR.UTF-8, LC_CTYPE=pt_BR.UTF-8 (charmap=UTF-8)