Bug#378288: marked as done (ITP: poa -- Partial Order Alignment for multiple sequence alignment)
Your message dated Sat, 02 Sep 2006 09:38:32 -0700
with message-id <E1GJYVs-0000OM-Ij@spohr.debian.org>
and subject line Bug#378288: fixed in poa 2.0-1
has caused the attached Bug report to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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(administrator, Debian Bugs database)
--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: poa -- Partial Order Alignment for multiple sequence alignment
- From: Charles Plessy <charles-debian-nospam@plessy.org>
- Date: Sat, 15 Jul 2006 11:22:21 +0900
- Message-id: <20060715022221.2925.82263.reportbug@sorbet.igloo>
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>
Package name : poa
Version : 2.0
Upstream Author : Christopher Lee <leec@mbi.ucla.edu>
URL : http://www.bioinformatics.ucla.edu/poa
License : GPL
Description : Partial Order Alignment for multiple sequence alignment
POA is Partial Order Alignment, a fast program for multiple sequence
alignment (MSA) in bioinformatics. Its advantages are speed,
scalability, sensitivity, and the superior ability to handle branching
/ indels in the alignment. Partial order alignment is an approach to
MSA, which can be combined with existing methods such as progressive
alignment. POA optimally aligns a pair of MSAs and which therefore can
be applied directly to progressive alignment methods such as CLUSTAL.
For large alignments, Progressive POA is 10–30 times faster than
CLUSTALW. POA is published in Bioinformatics. 2004 Jul
10;20(10):1546-56.
.
Homepage: http://www.bioinformatics.ucla.edu/poa
-- System Information:
Debian Release: testing/unstable
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing')
Architecture: powerpc (ppc64)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.16farm
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
--- End Message ---
--- Begin Message ---
Source: poa
Source-Version: 2.0-1
We believe that the bug you reported is fixed in the latest version of
poa, which is due to be installed in the Debian FTP archive:
poa_2.0-1.diff.gz
to pool/main/p/poa/poa_2.0-1.diff.gz
poa_2.0-1.dsc
to pool/main/p/poa/poa_2.0-1.dsc
poa_2.0-1_amd64.deb
to pool/main/p/poa/poa_2.0-1_amd64.deb
poa_2.0-1_i386.deb
to pool/main/p/poa/poa_2.0-1_i386.deb
poa_2.0-1_sparc.deb
to pool/main/p/poa/poa_2.0-1_sparc.deb
poa_2.0.orig.tar.gz
to pool/main/p/poa/poa_2.0.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 378288@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <charles-debian-nospam@plessy.org> (supplier of updated poa package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Sun, 20 Aug 2006 11:21:24 +0900
Source: poa
Binary: poa
Architecture: source i386 amd64 sparc
Version: 2.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <charles-debian-nospam@plessy.org>
Description:
poa - Partial Order Alignment for multiple sequence alignment
Closes: 378288
Changes:
poa (2.0-1) unstable; urgency=low
.
* Initial release Closes: #378288
Files:
b6814b9a3bfacf854d9ed85e65230f50 670 science optional poa_2.0-1.dsc
5f5df9525766bc98518f62b2afc2bd8f 50540 science optional poa_2.0.orig.tar.gz
3afe99abb5314217995e41fd34a4ee3e 4275 science optional poa_2.0-1.diff.gz
f26e259081ceb536332a1509a6871893 36156 science optional poa_2.0-1_i386.deb
f04363e1670c2c1b8ac42b655485416a 36778 science optional poa_2.0-1_sparc.deb
bd10c0dd060d92606a045b6ad63eb0a1 39970 science optional poa_2.0-1_amd64.deb
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--- End Message ---
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