[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#366321: marked as done (ITP: amap-align -- Protein multiple alignment by sequence annealing)

Your message dated Wed, 12 Jul 2006 10:49:56 -0700
with message-id <E1G0iqS-0005HO-M0@spohr.debian.org>
and subject line Bug#366321: fixed in amap-align 2.0-1
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what I am
talking about this indicates a serious mail system misconfiguration
somewhere.  Please contact me immediately.)

Debian bug tracking system administrator
(administrator, Debian Bugs database)
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>

  Package name    : amap-align
  Version         : 2.0
  Upstream Author : Ariel Schwartz <sariel@cs.berkeley.edu>
  URL             : http://bio.math.berkeley.edu/amap/download/amap.2.0.tar.gz
  License         : Public domain
  Description     : Protein multiple alignment by sequence annealing

 AMAP is a command line tool to perform multiple alignment of peptidic
 sequences. It utilizes posterior decoding, and a sequence-annealing
 alignment, instead of the traditional progressive alignment method. It
 is the only alignment program that allows to control the sensitivity /
 specificity tradeoff.  It is based on the ProbCons source code, but
 uses alignment metric accuracy and eliminates the consistency
 transformation.
 .
 Homepage: http://bio.math.berkeley.edu/amap/

Amap has of course nothing to do with the amap already packaged for
Debian ( http://packages.debian.org/unstable/net/amap ).


(By the way, I am looking for sponsors for kalign, dialign and
treeviewx, which I have uploaded on Mentors.
http://lists.debian.org/debian-mentors/2006/05/msg00014.html )

-- 
Charles Plessy
Wako, Saitama, Japan

--- End Message ---
--- Begin Message --- 
Source: amap-align
Source-Version: 2.0-1

We believe that the bug you reported is fixed in the latest version of
amap-align, which is due to be installed in the Debian FTP archive:

amap-align_2.0-1.diff.gz
  to pool/main/a/amap-align/amap-align_2.0-1.diff.gz
amap-align_2.0-1.dsc
  to pool/main/a/amap-align/amap-align_2.0-1.dsc
amap-align_2.0-1_i386.deb
  to pool/main/a/amap-align/amap-align_2.0-1_i386.deb
amap-align_2.0.orig.tar.gz
  to pool/main/a/amap-align/amap-align_2.0.orig.tar.gz



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 366321@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Charles Plessy <charles-debian-nospam@plessy.org> (supplier of updated amap-align package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.7
Date: Sun,  9 Jul 2006 12:53:25 +0900
Source: amap-align
Binary: amap-align
Architecture: source i386
Version: 2.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Charles Plessy <charles-debian-nospam@plessy.org>
Description: 
 amap-align - Protein multiple alignment by sequence annealing
Closes: 366321
Changes: 
 amap-align (2.0-1) unstable; urgency=low
 .
   * Initial release Closes: #366321
Files: 
 97ec57a795713d69e5221f2c4e7e1c14 706 science optional amap-align_2.0-1.dsc
 48a82988891f210d51f406fb9177f23d 42389 science optional amap-align_2.0.orig.tar.gz
 aa8c05ac7fd8f163524da1630a4cc8f4 5005 science optional amap-align_2.0-1.diff.gz
 5ec09750ccc95ba20694ab7b536d29e4 97512 science optional amap-align_2.0-1_i386.deb

-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.3 (GNU/Linux)

iD8DBQFEtIB6ipBneRiAKDwRAh61AJ9c6DgVQczeVK/hQuEPI4hvhMr2YgCaA7zP
ACOscH3ZULd4mvAl7FgRtOE=
=TBb3
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: