Bug#280411: marked as done (ITP: muscle -- [Biology] multiple alignment program for protein sequences)
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and subject line Bug#280411: fixed in muscle 3.51-1
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>From moeller@pzr3.pzr.uni-rostock.de Tue Nov 09 02:11:24 2004
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Date: Tue, 9 Nov 2004 11:10:50 +0100
From: Steffen Moeller <moeller@pzr.uni-rostock.de>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: muscle -- [Biology] multiple alignment program for protein sequences
Message-ID: <20041109101050.GA11462@pzr3.pzr.uni-rostock.de>
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Package: wnpp
Severity: wishlist
* Package name : muscle
Version : 3.5.1
Upstream Author : Robert C. Edgar <muscle@drive5.com>
* URL : http://www.drive5.com/muscle/
* License : Public domain
Description : [Biology] multiple alignment program for protein sequences
MUSCLE is a multiple alignment program for protein sequences. The
acronym stands for multiple sequence comparison by log-expectation.
In the author's tests (see reference below), MUSCLE achieved the highest scores
of all tested programs on several alignment accuracy benchmarks, and is
also one of the fastest programs out there, also outperforming ClustalW
which is already in Debian.
Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with high
accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97.
-- System Information:
Debian Release: 3.1
APT prefers testing
APT policy: (500, 'testing')
Architecture: i386 (i686)
Kernel: Linux 2.4.26
Locale: LANG=C, LC_CTYPE=C
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Received: (at 280411-close) by bugs.debian.org; 7 Dec 2004 05:19:27 +0000
>From rdonald@newraff.debian.org Mon Dec 06 21:19:27 2004
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From: Steffen Moeller <moeller@pzr.uni-rostock.de>
To: 280411-close@bugs.debian.org
X-Katie: lisa $Revision: 1.30 $
Subject: Bug#280411: fixed in muscle 3.51-1
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Sender: Randall Donald <rdonald@newraff.debian.org>
Date: Tue, 07 Dec 2004 00:11:54 -0500
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Source: muscle
Source-Version: 3.51-1
We believe that the bug you reported is fixed in the latest version of
muscle, which is due to be installed in the Debian FTP archive:
muscle_3.51-1.diff.gz
to pool/main/m/muscle/muscle_3.51-1.diff.gz
muscle_3.51-1.dsc
to pool/main/m/muscle/muscle_3.51-1.dsc
muscle_3.51-1_i386.deb
to pool/main/m/muscle/muscle_3.51-1_i386.deb
muscle_3.51.orig.tar.gz
to pool/main/m/muscle/muscle_3.51.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 280411@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Steffen Moeller <moeller@pzr.uni-rostock.de> (supplier of updated muscle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Sun, 19 Sep 2004 00:51:19 +0200
Source: muscle
Binary: muscle
Architecture: source i386
Version: 3.51-1
Distribution: unstable
Urgency: low
Maintainer: Steffen Moeller <moeller@pzr.uni-rostock.de>
Changed-By: Steffen Moeller <moeller@pzr.uni-rostock.de>
Description:
muscle - [Biology] multiple alignment program of protein sequences
Closes: 280411
Changes:
muscle (3.51-1) unstable; urgency=low
.
* Initial Release (Closes: Bug#280411).
Files:
6c6e391114604647b1b3426451f8d7f2 567 science optional muscle_3.51-1.dsc
a9289cb979c02f8228bfe3a94ba5220b 157068 science optional muscle_3.51.orig.tar.gz
187199e904d7909ca3022caec161714e 4202 science optional muscle_3.51-1.diff.gz
48e2931342b3deaabdc6a09c36c10071 165448 science optional muscle_3.51-1_i386.deb
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