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Re: Wheezy to Jessie update problem: packages with bugs



On 04/07/16 12:32 PM, Bill Harris wrote:
I updated one laptop a month or two ago using the process on
https://www.debian.org/releases/stable/amd64/release-notes/ch-upgrading.en.html,
and it worked smoothly.  Then I tried the same thing yesterday on a
second laptop, except that I forgot to get rid of a wheezy backports
entry; instead, I just did a blanket replace of wheezy with jessie.

After doing the apt-get upgrade, I got a few packages with bugs, but I
let them proceed, as the bugs didn't seem to apply to me (one referred
to difficulties when running in a VM, for example).

After the apt-get dist-upgrade, lots more bugs were reported:

------------------------------------------------------------------------
<a number of lines complaining about texlive-base>
   .
   .
   .
                   texlive-base:amd64 conflicts with texlive-font-utils:amd64
               texlive-base:amd64 conflicts with texlive-bibtex-extra:amd64
               texlive-base:amd64 conflicts with texlive-binaries:amd64
               texlive-base:amd64 conflicts with texlive-extra-utils:amd64
           texlive-base:amd64 conflicts with texlive-bibtex-extra:amd64
           texlive-base:amd64 conflicts with texlive-binaries:amd64
     texlive-base:amd64 conflicts with texlive-bibtex-extra:amd64
   libtk8.5:amd64 conflicts with tk8.5:amd64
Retrieving bug reports... Done
Parsing Found/Fixed information... Done
critical bugs of evolution-data-server (3.4.4-3+deb7u1 -> 3.12.9~git20141128.5242b0-2+deb8u2) <forwarded>
  #787398 - evolution-data-server: SMTP connection lost while reading message data (Fixed: evolution-data-server/3.16.2-1)
critical bugs of pinentry-gtk2 (0.8.1-1 -> 0.8.3-2) <forwarded>
  #750521 - scim-gtk-immodule breaks pinentry-gtk2 and impairs gnome-keyring (Fixed: pinentry/0.9.6-1)
serious bugs of emacs24 (-> 24.4+1-5) <forwarded>
  #766397 - emacs/gnus: Uses s_client to for SSL.
serious bugs of firefox-esr (-> 45.2.0esr-1~deb8u1) <forwarded>
  #822715 - firefox-esr: FTBFS with GCC 6: 'malloc' was not declared in this scope
critical bugs of udisks2 (-> 2.1.3-5) <marked as done in some version>
  #821126 - gparted: mount is unsupported. (Fixed: udisks2/2.1.5-1)
    Merged with: 782838
grave bugs of libgluegen2-rt-java (-> 2.2.4-2) <marked as done in some version>
  #779482 - support for powerpc, ppc64el and s390x not complete (Fixed: gluegen2/2.3.2-3)
grave bugs of firefox-esr (-> 45.2.0esr-1~deb8u1) <marked as done in some version>
  #825909 - firefox-esr: crash when loading videos (Fixed: firefox-esr/45.2.0esr-1)
grave bugs of python-mock (-> 1.0.1-3) <marked as done in some version>
  #794461 - RequirementParseError: Expected version spec in funcsigs; python_version<"3.3" at ; python_version<"3.3" (Fixed: python-mock/1.3.0-2.1)
grave bugs of gdm3 (3.4.1-8 -> 3.14.1-7) <marked as done in some version>
  #784671 - gdm3 wouldn't start until caribou path changed (Fixed: gdm3/3.14.1-8)
grave bugs of libpoppler-glib8 (0.18.4-6+deb7u1 -> 0.26.5-2+deb8u1) <marked as done in some version>
  #767659 - evince 3.14.1-1 gets undefined symbol with libpoppler46:i386 earlier than 0.26.5-2 (Fixed: poppler/0.26.5-3)
    Merged with: 768475 768985 771329
grave bugs of evolution (3.4.4-3 -> 3.12.9~git20141130.241663-1+b1) <marked as done in some version>
  #788029 - evolution: undefined symbol: e_file_lock_get_pid Must depend on same libevolution version (Fixed: evolution/3.16.5-1)
grave bugs of lynx-cur (2.8.8dev.12-2 -> 2.8.9dev1-2+deb8u1) <marked as done in some version>
  #776073 - lynx-cur: can connect to site with expired certificate (Fixed: lynx-cur/2.8.9dev4-1)
grave bugs of totem (3.0.1-8 -> 3.14.0-2) <marked as done in some version>
  #785538 - [totem] totem crashes at start, no way to start it. (Fixed: totem/3.16.2-1)
grave bugs of python-paramiko (1.7.7.1-3.1 -> 1.15.1-1) <marked as done in some version>
  #754851 - paramiko fails with int too long or returns broken filenames (Fixed: paramiko/2.0.0-1 paramiko/1.15.3-1)
grave bugs of libarchive13 (-> 3.1.2-11+deb8u1) <marked as done in some version>
  #823984 - libarchive13/unstable is older than libarchive13/stable (Fixed: libarchive/3.2.1-1 libarchive/3.1.2-11.1)
grave bugs of init-system-helpers (-> 1.22) <marked as done in some version>
  #827191 - invoke-rc.d don't start systemd services (Fixed: init-system-helpers/1.35)
serious bugs of dbus (1.6.8-1+deb7u6 -> 1.8.20-0+deb8u1) <marked as done in some version>
  #813970 - dbus: purge fails: invoke-rc.d: initscript dbus, action "stop" failed. (Fixed: dbus/1.11.2-1 dbus/1.10.8-1)
serious bugs of libxml2 (2.8.0+dfsg1-7+wheezy6 -> 2.9.1+dfsg1-5+deb8u2) <marked as done in some version>
  #795279 - libvirt0: Libvirt reports malformed URI for active connection (Fixed: libxml2/2.9.1+dfsg1-5+deb8u3 libxml2/2.9.2+really2.9.1+dfsg1-0.2 libxml2/2.9.2+zdfsg1-4)
    Merged with: 781232 797450 797490 827223
serious bugs of debhelper (9.20120909 -> 9.20150101) <marked as done in some version>
  #747141 - debhelper: dh_installdocs --link-doc forces source-version dependencies (Fixed: debhelper/9.20150501)
serious bugs of smartmontools (5.41+svn3365-1 -> 6.3+svn4002-2+b2) <marked as done in some version>
  #777583 - incorrect debian/copyright for smartmontools violates Debian policy (Fixed: smartmontools/6.4+svn4214-1)
serious bugs of apt-xapian-index (0.45 -> 0.47) <marked as done in some version>
  #803936 - goplay: not installable using aptitude with "apt-xapian-index.postinst: update-python-modules: not found" (Fixed: apt-xapian-index/0.47+nmu1)
    Merged with: 793681
serious bugs of hdparm (9.39-1+b1 -> 9.43-2) <marked as done in some version>
  #725284 - hdparm + systemd: Configuration not restored after resume (Fixed: hdparm/9.48+ds-1)
serious bugs of evolution (3.4.4-3 -> 3.12.9~git20141130.241663-1+b1) <marked as done in some version>
  #784625 - evolution: crash on start [Arithmetic exception in e_day_view_convert_position_in_main_canvas at e-day-view.c:8158] (Fixed: 3.12.11-1)
serious bugs of xserver-xorg-video-siliconmotion (1:1.7.6-1 -> 1:1.7.7-2+b2) <marked as done in some version>
  #785491 - xserver-xorg-video-siliconmotion FTBFS on arm64, implicit declarations of inb and outb (Fixed: 1:1.7.8-1)
serious bugs of q4wine (0.121-4 -> 1.1-r2-3) <marked as done in some version>
  #820185 - q4wine: recommends package outside main (Fixed: q4wine/1.3-1)
serious bugs of gparted (0.12.1-2+b1 -> 0.19.0-2) <marked as done in some version>
  #781716 - gparted: partitioning fails due to lack of udisks2 locking and automount (Fixed: gparted/0.19.0-2.1)
serious bugs of libfreetype6 (2.4.9-1.1+deb7u3 -> 2.5.2-3+deb8u1) <marked as done in some version>
  #780143 - libfreetype6_2.5.2-3 makes some fonts unusable (Fixed: 2.5.2-4 freetype/2.5.2-4)
serious bugs of busybox (1:1.20.0-7 -> 1:1.22.0-9+deb8u1) <marked as done in some version>
  #768876 - busybox-static is statically linked against libc6, but doesn't have a Built-Using: field (Fixed: 1:1.22.0-10)
serious bugs of stunnel4 (3:4.53-1.1 -> 3:5.06-2+deb8u1) <marked as done in some version>
  #771241 - stunnel4 sometimes truncates long server reply (Fixed: stunnel4/3:5.18-1)
    Merged with: 787062
  #782030 - stunnel4: Fails to restart on slow/loaded systems (Fixed: stunnel4/3:5.18-1)
serious bugs of dh-python (-> 1.20141111-2) <marked as done in some version>
  #803689 - pypy: DEFAULT_SOABI at pypy-26 while DEFAULT_MAGIC_TAG = 'pypy-40' (Fixed: dh-python/2.20151103)
serious bugs of cups-driver-gutenprint (5.2.9-1 -> 5.2.10-3) <marked as done in some version>
  #812413 - cups-driver-gutenprint: transitional arch:all package uninstallable after binNMU due to strict versioned dependency (Fixed: 5.2.11~pre2-1)
critical bugs of gnome-settings-daemon (3.4.2+git20121218.7c1322-3+deb7u3 -> 3.14.2-3) <unfixed>
  #827639 - gnome-settings-daemon: wrong owner of /run/user/1000/dconf/user causes X to freeze
critical bugs of cron (3.0pl1-124 -> 3.0pl1-127+deb8u1) <unfixed>
  #809167 - cron: Cron Daemon Use-After-Free Vulnerability May Cause Local Root Privilege Escalation
grave bugs of ndiff (-> 6.47-3+deb8u2) <unfixed>
  #804193 - ndiff python module is not installed (Fixed: nmap/6.47-5)
grave bugs of minissdpd (1.1.20120121-1+deb7u1 -> 1.2.20130907-3) <unfixed>
  #816759 - minissdpd: CVE-2016-3178 CVE-2016-3179 (Fixed: 1.1.20120121-1+deb7u1)
grave bugs of grub-pc-bin (1.99-27+deb7u3 -> 2.02~beta2-22+deb8u1) <unfixed>
  #741464 - grub-pc-bin: freezes after "terminal_input at_keyboard"
grave bugs of libnl-3-200 (3.2.7-4 -> 3.2.24-2) <unfixed>
  #799276 - libnl-3-200: depends on libc6 version that doesn't exist in wheezy-backports
grave bugs of googleearth-package (0.7.0 -> 1.2.2) <unfixed>
  #799843 - googleearth-package: geerated package depends on lsb-core which is not available on sid
grave bugs of grub2-common (1.99-27+deb7u3 -> 2.02~beta2-22+deb8u1) <unfixed>
  #735932 - [grub2-common] Computer does not boot
grave bugs of empathy (3.4.2.3-2+deb7u1 -> 3.12.7-1) <unfixed>
  #735097 - empathy: Empathy 3.8 kfreebsd-amd64 can't open window conversation
serious bugs of openbsd-inetd (0.20091229-2 -> 0.20140418-2) <unfixed>
  #781155 - openbsd-inetd: openbsd-inetd.service should be the main service file
serious bugs of ruby-hpricot (0.8.6-3 -> 0.8.6-5+b3) <unfixed>
  #796020 - ruby-hpricot: Obsolete
serious bugs of cdrdao (1:1.2.3-0.3 -> 1:1.2.3-2) <unfixed>
  #811733 - cdrdao: FTBFS with GCC 6: narrowing conversion
serious bugs of firefox-esr (-> 45.2.0esr-1~deb8u1) <unfixed>
  #827395 - firefox-esr: Firefox-esr privacy invading defaults load beacons on 1st run
serious bugs of dasher (4.11-2 -> 4.11+git20130508.adc653-2) <unfixed>
  #811640 - FTBFS with GCC 6: cannot convert x to y
serious bugs of iceweasel (38.7.1esr-1~deb7u1 -> 45.2.0esr-1~deb8u1) <unfixed>
  #812162 - iceweasel: FTBFS with GCC 6: size of array
serious bugs of gdm3 (3.4.1-8 -> 3.14.1-7) <unfixed>
  #794316 - can't unlock desktop
  #785782 - greeter screen appears without login prompt
serious bugs of logrotate (3.8.1-4 -> 3.8.7-1+b1) <unfixed>
  #734688 - Logs are not rotated for a month
serious bugs of freehdl (0.0.7-1.1 -> 0.0.8-2.1) <unfixed>
  #811804 - freehdl: FTBFS with GCC 6: error: reference is ambiguous
serious bugs of nfs-common (1:1.2.6-4 -> 1:1.2.8-9) <unfixed>
  #788546 - nfs4 mount.nfs does not respect option "user" in fstab in Jessie
    Merged with: 788547 790880
serious bugs of ed (1.6-2 -> 1.10-2) <unfixed>
  #799702 - ed: ships /usr/share/info/dir.gz on arm64 (Fixed: ed/1.10-2.1)
serious bugs of samba-common-bin (2:3.6.6-6+deb7u10 -> 2:4.2.10+dfsg-0+deb8u3) <unfixed>
  #820965 - [regression]: net usersidlist: Could not malloc sid array Could not get the user/sid list
serious bugs of synergy (1.3.8-2 -> 1.4.16-1) <unfixed>
  #812303 - synergy: FTBFS with GCC 6: test suite segfaults
serious bugs of dh-python (-> 1.20141111-2) <unfixed>
  #733239 - dh-python: there is no script in the new version of the package - giving up-Jessie
Summary:
  emacs24(1 bug), dbus(1 bug), gnome-settings-daemon(1 bug), libxml2(1 bug), debhelper(1 bug), openbsd-inetd(1 bug), smartmontools(1 bug), ruby-hpricot(1 bug), cdrdao(1 bug), libgluegen2-rt-java(1 bug), ndiff(1 bug), apt-xapian-index(1 bug), firefox-esr(3 bugs), dasher(1 bug), minissdpd(1 bug), iceweasel(1 bug), evolution-data-server(1 bug), python-mock(1 bug), grub-pc-bin(1 bug), hdparm(1 bug), gdm3(3 bugs), libpoppler-glib8(1 bug), logrotate(1 bug), evolution(2 bugs), xserver-xorg-video-siliconmotion(1 bug), q4wine(1 bug), lynx-cur(1 bug), gparted(1 bug), freehdl(1 bug), totem(1 bug), nfs-common(1 bug), python-paramiko(1 bug), ed(1 bug), libfreetype6(1 bug), busybox(1 bug), libarchive13(1 bug), libnl-3-200(1 bug), googleearth-package(1 bug), grub2-common(1 bug), empathy(1 bug), samba-common-bin(1 bug), udisks2(1 bug), stunnel4(2 bugs), pinentry-gtk2(1 bug), synergy(1 bug), cron(1 bug), dh-python(2 bugs), init-system-helpers(1 bug), cups-driver-gutenprint(1 bug)
Are you sure you want to install/upgrade the above packages? [Y/n/?/...] n
**********************************************************************
****** Exiting with an error in order to stop the installation. ******
**********************************************************************
E: Sub-process /usr/sbin/apt-listbugs apt || exit 10 returned an error code (10)
E: Failure running script /usr/sbin/apt-listbugs apt || exit 10

real	0m33.724s
user	0m6.276s
sys	0m0.300s

------------------------------------------------------------------------

Here is my sources.list:

,----
| #
|
| # deb cdrom:[Debian GNU/Linux 6.0.3 _Jessie_ - Official amd64 NETINST Binary-1 20111008-19:52]/ jessie main
|
| # deb cdrom:[Debian GNU/Linux 6.0.3 _Jessie_ - Official amd64 NETINST Binary-1 20111008-19:52]/ jessie main
|
| deb http://ftp.us.debian.org/debian/ jessie main non-free contrib
| deb-src http://ftp.us.debian.org/debian/ jessie main non-free contrib
|
| deb http://security.debian.org/ jessie/updates main contrib non-free
| deb-src http://security.debian.org/ jessie/updates main contrib non-free
|
| # jessie-updates, previously known as 'volatile'
| deb http://ftp.us.debian.org/debian/ jessie-updates main contrib non-free
| deb-src http://ftp.us.debian.org/debian/ jessie-updates main contrib non-free
|
| # R backports at http://cran.fhcrc.org/
| deb http://cran.fhcrc.org/bin/linux/debian jessie-cran3/
|
| # Jessie backports http://backports-master.debian.org/Instructions/
| # deb http://ftp.debian.org/debian jessie-backports main contrib non-free
|
`----

I commented out the backports entry and ran apt-get update, apt-get
upgrade, and apt-get dist-upgrade before getting the above output.

I am guessing there are two problems--one with texlive and one with
packages with errors.  Any advice on how to proceed efficiently and
successfully?

- Accept all these; they aren't really bad.
- I don't really care about Evolution, as I use Gnus.

   - I'll likely replace gutenprint with what comes with the latest
     hplips.

   - Still, I would use emacs24, gnome, and others here.

- Pin them all (there are a lot).
   - If you suggest this, advice on how would be helpful.  I only get Y/n
     options, no ability to pin one package at a time.

- Something else?

Thanks,

Bill


The simplest solution would be to reinstall the offending packages. Apt-get doesn't have that option but aptitude does. I can't try this at home but it may resolve the conflicts. Install aptitude and give it a try.


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