Bug#670040: pax do not work at all

[Juhapekka Tolvanen <juhtolv@iki.fi>]

Package: texlive-latex-extra
Version: 2011.20120322-1
Severity: grave


% java -jar /usr/share/texlive/texmf-dist/scripts/pax/pax.jar kilinorganisaatio.pdf
Exception in thread "main" java.lang.NoClassDefFoundError: org/pdfbox/cos/ICOSVisitor
        at java.lang.Class.getDeclaredMethods0(Native Method)
        at java.lang.Class.privateGetDeclaredMethods(Class.java:2442)
        at java.lang.Class.getMethod0(Class.java:2685)
        at java.lang.Class.getMethod(Class.java:1620)
        at sun.launcher.LauncherHelper.getMainMethod(LauncherHelper.java:488)
        at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:480)
Caused by: java.lang.ClassNotFoundException: org.pdfbox.cos.ICOSVisitor
        at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
        at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:423)
        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:356)
        ... 6 more


I tried that with three different PDF-files. One of them was my
Master's Thesis:

http://iki.fi/juhtolv/gradu/sosl70c.screen.pdf

My java-command points to this:

% whence -savc java
/usr/bin/java -> /usr/lib/jvm/java-7-openjdk-i386/jre/bin/java

That file belongs to package called openjdk-7-jre-headless


-- Package-specific info:
If you report an error when running one of the TeX-related binaries 
(latex, pdftex, metafont,...), or if the bug is related to bad or wrong
output, please include a MINIMAL example input file that produces the
error in your report. 

Please run your example with
	(pdf)latex -recorder ...
(or any other program that supports -recorder) and send us the generated
file with the extension .fls, it lists all the files loaded during
the run and can easily explain problems induced by outdated files in
your home directory.

Don't forget to also include minimal examples of other files that are 
needed, e.g. bibtex databases. Often it also helps
to include the logfile. Please, never send included pictures!

If your example file isn't short or produces more than one page of
output (except when multiple pages are needed to show the problem),
you can probably minimize it further. Instructions on how to do that
can be found at

http://www.latex-einfuehrung.de/mini-en.html (english)

or 

http://www.latex-einfuehrung.de/mini.html (german)

##################################
minimal input file


##################################
other files

######################################
 List of ls-R files

-rw-r--r-- 1 root root 2004 Apr 16 22:28 /var/lib/texmf/ls-R
lrwxrwxrwx 1 root root 29 Mar 25 02:48 /usr/share/texmf/ls-R -> /var/lib/texmf/ls-R-TEXMFMAIN
lrwxrwxrwx 1 root root 31 Apr 10 11:09 /usr/share/texlive/texmf/ls-R -> /var/lib/texmf/ls-R-TEXLIVEMAIN
-rw-r--r-- 1 root root 42689 Apr 16 22:27 /usr/local/share/texmf/ls-R
lrwxrwxrwx 1 root root 31 Apr 10 11:09 /usr/share/texlive/texmf-dist/ls-R -> /var/lib/texmf/ls-R-TEXLIVEDIST
lrwxrwxrwx 1 root root 31 Apr 10 11:09 /usr/share/texlive/texmf-dist/ls-R -> /var/lib/texmf/ls-R-TEXLIVEDIST
lrwxrwxrwx 1 root root 31 Apr 10 11:09 /usr/share/texlive/texmf/ls-R -> /var/lib/texmf/ls-R-TEXLIVEMAIN
######################################
 Config files
-rw-r--r-- 1 root root 1534 Apr 16 18:37 /etc/texmf/web2c/texmf.cnf
-rw-r--r-- 1 root root 6572 Apr 16 22:27 /var/lib/texmf/web2c/fmtutil.cnf
-rw-r--r-- 1 root root 12 Apr 16 18:39 /etc/texmf/web2c/updmap.cfg
-rw-r--r-- 1 root root 4680 Apr 16 22:27 /var/lib/texmf/tex/generic/config/language.dat
######################################
 Files in /etc/texmf/web2c/
total 12
-rw-r--r-- 1 root root  283 Mar 25 02:48 mktex.cnf
-rw-r--r-- 1 root root 1534 Apr 16 18:37 texmf.cnf
-rw-r--r-- 1 root root   12 Apr 16 18:39 updmap.cfg
######################################
 md5sums of texmf.d
d588a08518f705d06ac262acd78f2bc4  /etc/texmf/texmf.d/20xmltex.cnf
055e06548bac99958d8ab2dd1248f2b4  /etc/texmf/texmf.d/80tex4ht.cnf
1df66bc319cec731e202eaf39f5d85e1  /etc/texmf/texmf.d/96JadeTeX.cnf

-- System Information:
Debian Release: wheezy/sid
  APT prefers stable
  APT policy: (990, 'stable'), (500, 'testing-proposed-updates'), (500, 'stable-updates'), (500, 'proposed-updates'), (102, 'testing'), (101, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 3.2.0-2-686-pae (SMP w/1 CPU core)
Locale: LANG=fi_FI.utf8, LC_CTYPE=fi_FI.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages texlive-latex-extra depends on:
ii  dpkg                       1.16.2
ii  preview-latex-style        11.86-10
ii  tex-common                 3.5
ii  texlive-binaries           2011.20120410-1
ii  texlive-common             2011.20120410-1
ii  texlive-latex-recommended  2011.20120410-1
ii  texlive-pictures           2011.20120410-1

Versions of packages texlive-latex-extra recommends:
pn  texlive-latex-extra-doc  2011.20120322-1
pn  texpower                 <none>

Versions of packages texlive-latex-extra suggests:
ii  libfile-which-perl  1.08-1

Versions of packages tex-common depends on:
ii  debconf [debconf-2.0]  1.5.42
ii  dpkg                   1.16.2
ii  ucf                    3.0025+nmu2

Versions of packages tex-common suggests:
ii  debhelper  9.20120115

Versions of packages texlive-latex-extra is related to:
ii  tex-common        3.5
ii  texlive-binaries  2011.20120410-1

-- debconf information:
  tex-common/check_texmf_wrong:
  tex-common/check_texmf_missing:

-- 
Juhapekka "naula" Tolvanen * http colon slash slash iki dot fi slash juhtolv
"Quidquid Latine dictum sit altum videtur."