My report from Debian Med sprint
as usual the Debian Med sprint was happening at beginning of the year.
Thanks to Michael R. Crusoe it was organised in Bucharest. We had a
quite productive time which was dominated by bug fixing and upgrading
packages for the stretch release as well as writing or fixing
autopkgtests for Debian Med packages.
My personal report can be found as usual in the Wiki - here is a
copy of my activities:
sra-toolkit update: done
freebayes: uploaded to new
libgraphics-colornames-perl: libgraphics-colornames-perl: Build-Depends on perl-modules-5.22
libgraphics-colorobject-perl: Build-Depends on perl-modules-5.22
libbio-perl-run-perl: fails to upgrade from 'jessie'
primer3 FTCBFS: uses build architecture c++ compiler via unconventional variable CPP
sra-toolkit: /usr/bin/kget is already shipped by the package kget
snap: Update autokpgtest for name change
mricron FTBFS because fpc check got more strict
r-cran-shiny to 1.0.0
snakemake to 3.9.1
bamtools to 2.4.1
sniffles to 1.0.2
r-bioc-annotationdbi to 1.36.1
r-cran-spdep to 0.6-9
r-cran-maptools to 0.8-41
r-cran-maldiquant to 1.16.1-1
r-cran-googlevis to 0.6.2-1
qtltools to 1.1
yaggo to 1.5.9
Test for r-bioc-geneplotter removed since not packaged databases would be needed
Anton by packaging gxargparse and galaxyxml
python-pybedtools (Michael Crusoe)
python-gffutils (Michael Crusoe)
Thanks to Debian for supporting the Debian Med sprint.