Re: Bug#1040498: Should we consider the transition ready (Was: Bug#1040498: transition: r-bioc-biocgenerics)

[Andreas Tille <tille@debian.org>]

Hi Graham,

Am Thu, Sep 28, 2023 at 01:27:08PM +0000 schrieb Graham Inggs:
> I noticed r-bioc-keggrest has finally migrated, and several other
> r-bioc-* packages with it!
> 
> \o/
> 
> I looked through the remaining blocked packages and found the
> following still have failing autopkgtests:

I finally found some time to work on these.
 
> https://tracker.debian.org/pkg/r-bioc-biocneighbors

Sent mail upstream.

> https://tracker.debian.org/pkg/r-bioc-cner

Hopefully fixed.

> https://tracker.debian.org/pkg/r-bioc-ensembldb

Seems to be just a dependency issue.

> https://tracker.debian.org/pkg/r-bioc-glmgampoi

I'm about to fix this.

> https://tracker.debian.org/pkg/r-bioc-isoformswitchanalyzer

Hmmmm, the log for s390x [1] says:

 The following packages have unmet dependencies:
  r-bioc-isoformswitchanalyzer : Depends: r-api-bioc-3.16

r-apr-bioc-3.16 is superseeded by r-api-bioc-3.17 and this dependency
can't be fulfilled any more.  I'm wondering why this id requested for
s390x architecture only while all other architectures are passing as
expected.

> https://tracker.debian.org/pkg/r-bioc-megadepth
> https://tracker.debian.org/pkg/r-bioc-rsamtools
> https://tracker.debian.org/pkg/r-bioc-scuttle
> https://tracker.debian.org/pkg/r-bioc-shortread
> https://tracker.debian.org/pkg/r-bioc-tcgabiolinks
> 
> Fixing these should allow another thirty or so r-bioc-* packages to migrate.

Try to work soon on these
    Andreas.

[1] https://ci.debian.net/data/autopkgtest/testing/s390x/r/r-bioc-isoformswitchanalyzer/36883064/log.gz 

-- 
http://fam-tille.de