Re: Transfering packages from Debian Med to DPT (Was: Please enable me transfering python-bioblend to Debian Med team)
Am Sat, Jan 01, 2022 at 09:28:10PM -0500 schrieb Sandro Tosi:
> > In general we are open to hand over general packages that are not
> > directly touching the medical / biological field to competent hands. So
> > just ping me and I'll try to respond as quick as possible.
>
> with UDD-mirror U&R now, i was able to generate the below list. This
> is in no way a request to move them, just a potential source of data
> for your consideration
>
> arcp 0.2.1-3
> python3-arcp : (Archive and Package) URI parser and generator
Moved to Debian Python Team
> enlighten 1.7.2-1
> python3-enlighten : console progress bar module for Python3
> python3-enlighten-doc : console progress bar module for Python3
> (documentation)
> python3-enlighten-examples : console progress bar module for
> Python3 (examples)
Moved to Debian Python Team - I packaged version 1.8.0 which is the
last one that does not need the module prefixed (which is a new
dependency since version 1.9.0). Unfortunately the build time test
fails with:
...
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fea5d6e20b0>: Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/blessed/
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fea5d6e2020>: Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/blessed/
ERROR: Could not find a version that satisfies the requirement backports.functools-lru-cache>=1.2.1 (from blessed)
ERROR: No matching distribution found for backports.functools-lru-cache>=1.2.1
=================================== log end ====================================
ERROR: could not install deps [blessed]; v = InvocationError('/build/enlighten-1.8.0/.tox/py310/bin/python -m pip install blessed', 1)
___________________________________ summary ____________________________________
ERROR: py310: could not install deps [blessed]; v = InvocationError('/build/enlighten-1.8.0/.tox/py310/bin/python -m pip install blessed', 1)
E: pybuild pybuild:367: test: plugin distutils failed with: exit code=1: cd /build/enlighten-1.8.0/.pybuild/cpython3_3.10/build; tox -c /build/enlighten-1.8.0/tox.ini --sitepackages -e py310
I: pybuild base:237: cd /build/enlighten-1.8.0/.pybuild/cpython3_3.9/build; tox -c /build/enlighten-1.8.0/tox.ini --sitepackages -e py39
May be you want to have a look to finalise the move to Debian Python Tem.
> h5sparse 0.1.0-4
> python3-h5sparse : Scipy sparse matrix in HDF5
Moved to Debian Python Team
> indexed-gzip 1.6.4-1
> python3-indexed-gzip : fast random access of gzip files in Python
Moved to Debian Python Team
> pyrle 0.0.33-2
> python3-pyrle : run length arithmetic in Python
Moved to Debian Python Team
> python-anndata 0.7.8-2
> python3-anndata : annotated gene by sample numpy matrix
^^^^^^^^^^^^^^
I think this package is nicely maintained by Debian Med team since it is
in the field of bioinformatics.
> python-avro 1.10.2+dfsg-1
> python3-avro : Apache Avro serialization system (Python 3 library)
Moved to Debian Python Team. After upgrading to latest upstream version
the build ends with
...
======================================================================
ERROR: test_server_with_path (avro.test.test_ipc.TestIPC)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/build/python-avro-1.11.0+dfsg/.pybuild/cpython3_3.9_avro/build/avro/test/test_ipc.py", line 35, in test_server_with_path
client_with_custom_path = avro.ipc.HTTPTransceiver("apache.org", 80, "/service/article")
File "/build/python-avro-1.11.0+dfsg/.pybuild/cpython3_3.9_avro/build/avro/ipc.py", line 442, in __init__
self.conn.connect()
File "/usr/lib/python3.9/http/client.py", line 946, in connect
self.sock = self._create_connection(
File "/usr/lib/python3.9/socket.py", line 823, in create_connection
for res in getaddrinfo(host, port, 0, SOCK_STREAM):
File "/usr/lib/python3.9/socket.py", line 954, in getaddrinfo
for res in _socket.getaddrinfo(host, port, family, type, proto, flags):
socket.gaierror: [Errno -3] Temporary failure in name resolution
----------------------------------------------------------------------
Ran 396 tests in 10.738s
FAILED (errors=1, skipped=2)
Unfortunately my time to investigate into this ends now.
I will continue with your list ... and wished moves in the other
direction could be as simple and unbureaucratic as it can be.
Kind regards
Andreas.
> python-ciso8601 2.2.0-1
> python3-ciso8601 : fast ISO8601 date time parser for Python written in C
> python-colormap 1.0.4-2
> python3-colormap : ease manipulation of matplotlib colormaps and
> color codecs (Python 3)
> python-colormath 3.0.0-1.1
> python3-colormath : Abstracts common color math operations (Python
> 3 version)
> python-cooler 0.8.11-1
> python3-cooler : library for a sparse, compressed, binary persistent storage
> python3-cooler-examples : library for a sparse, compressed, binary
> persistent storage (examples)
> python-depinfo 1.7.0-1
> python3-depinfo : retrieve and print Python 3 package dependencies
> python-duckpy 3.2.0-2
> python3-duckpy : simple Python library for searching on DuckDuckGo
> python-easydev 0.12.0+dfsg-1
> python3-easydev : common utilities to ease the development of
> Python packages (Python 3)
> python-etelemetry 0.2.0-4
> python3-etelemetry : lightweight Python3 client to communicate
> with the etelemetry server
> python-fitbit 0.3.1-2
> python-fitbit-doc : FitBit REST API Client Implementation - Documentation
> python3-fitbit : FitBit REST API Client Implementation - Python 3
> python-hdmedians 0.14.2-3
> python3-hdmedians : high-dimensional medians in Python3
> python-leidenalg 0.8.8-1
> python3-leidenalg : Python3 implementation of the Leiden algorithm in C++
> python-lzstring 1.0.4-1.1
> python3-lzstring : LZ-based compression algorithm for Python
> (Python 3 version)
> python-matplotlib-venn 0.11.6-2
> python3-matplotlib-venn : Python 3 plotting area-proportional two-
> and three-way Venn diagrams
> python-multipletau 0.3.3+ds-3
> python-multipletau-doc : documentation for multipletau Python module
> python3-multipletau : multiple-tau algorithm for Python3/NumPy
> python-multisplitby 0.0.1-4
> python3-multisplitby : Python3 module to create iterables split on
> arbitrary separators
> python-ncls 0.0.63+ds-1
> python3-ncls : datastructure for interval overlap queries
> python-pipdeptree 2.2.0-2
> python3-pipdeptree : display dependency tree of the installed
> Python 3 packages
> python-pyflow 1.1.20-3
> python3-pyflow : lightweight parallel task engine for Python
> python-pynndescent 0.5.2+dfsg-1
> python3-pynndescent : nearest neighbor descent for approximate
> nearest neighbors
> python-pypubsub 4.0.3-5
> python3-pubsub : Python 3 publish-subcribe library
> python-sinfo 0.3.1-2
> python3-sinfo : print different version information for loaded modules
> python-spectra 0.0.11-3
> python3-spectra : Easy color scales and color conversion for
> Python (Python 3 version)
> python-stdlib-list 0.8.0-4
> python3-stdlib-list : List of Python Standard Libraries (2.6-7, 3.2-9)
> python-streamz 0.6.3-1
> python3-streamz : build pipelines to manage continuous streams of data
> python-stubserver 1.1-2
> python3-stubserver : mock tester of external web dependencies for Python
> python-tinyalign 0.2-5
> python3-tinyalign : numerical representation of differences between strings
> python-typechecks 0.1.0+ds-2
> python3-typechecks : express constraints on types
> python-upsetplot 0.6.0-2
> python3-upsetplot : Draw Lex et al.'s UpSet plots with Pandas and Matplotlib
> python-wdlparse 0.1.0-2
> python3-wdlparse : Workflow Description Language (WDL) parser for Python
> python-wordcloud 1.8.1+dfsg-2
> python3-wordcloud : little word cloud generator in Python
> python-xopen 1.2.1-3
> python3-xopen : Python3 module to open compressed files transparently
> smart-open 5.2.1-3
> python3-smart-open : utils for streaming large files
> sorted-nearest 0.0.31+dfsg-1
> python3-sorted-nearest : Cython helper library for pyranges
> sphinxcontrib-autoprogram 0.1.7-1
> python3-sphinxcontrib.autoprogram : automated documentation of CLI
> programs for Sphinx (Python 3)
>
> Thanks,
> --
> Sandro "morph" Tosi
> My website: http://sandrotosi.me/
> Me at Debian: http://wiki.debian.org/SandroTosi
> Twitter: https://twitter.com/sandrotosi
>
--
http://fam-tille.de
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