Error in build time tests (Was: numpy breaks nipy autopkgtest: No module named 'numpy.testing.decorators')
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Hi,
I've updated nipy Git[1] to version 0.4.3~rc1 which solves the
originally reported issue. However, there are some remaining failures
in the build time test:
...
======================================================================
ERROR: Failure: TypeError (unsupported operand type(s) for *: 'GreaterThan' and 'Add')
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest
raise self.exc_val.with_traceback(self.tb)
File "/usr/lib/python3/dist-packages/nose/loader.py", line 416, in loadTestsFromName
module = self.importer.importFromPath(
File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/usr/lib/python3.9/imp.py", line 234, in load_module
return load_source(name, filename, file)
File "/usr/lib/python3.9/imp.py", line 171, in load_source
module = _load(spec)
File "<frozen importlib._bootstrap>", line 711, in _load
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 790, in exec_module
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
File "/build/nipy-0.4.3~rc1/.pybuild/cpython3_3.9_nipy/build/nipy/modalities/fmri/design.py", line 20, in <module>
from .hrf import glover
File "/build/nipy-0.4.3~rc1/.pybuild/cpython3_3.9_nipy/build/nipy/modalities/fmri/hrf.py", line 123, in <module>
_gexpr = gamma_expr(5.4, 5.2) - 0.35 * gamma_expr(10.8, 7.35)
File "/build/nipy-0.4.3~rc1/.pybuild/cpython3_3.9_nipy/build/nipy/modalities/fmri/hrf.py", line 106, in gamma_expr
coef * ((T >= 0) * (T+1.0e-14))**(shape-1)
TypeError: unsupported operand type(s) for *: 'GreaterThan' and 'Add'
======================================================================
ERROR: Failure: TypeError (unsupported operand type(s) for *: 'GreaterThan' and 'Add')
----------------------------------------------------------------------
... (more of this type) ...
======================================================================
FAIL: Doctest: nipy.modalities.fmri.utils.convolve_functions
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.9/doctest.py", line 2204, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for nipy.modalities.fmri.utils.convolve_functions
File "/build/nipy-0.4.3~rc1/.pybuild/cpython3_3.9_nipy/build/nipy/modalities/fmri/utils.py", line 494, in convolve_functions
----------------------------------------------------------------------
File "/build/nipy-0.4.3~rc1/.pybuild/cpython3_3.9_nipy/build/nipy/modalities/fmri/utils.py", line 533, in nipy.modalities.fmri.utils.convolve_functions
Failed example:
f1 = (t > 0) * (t < 1)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python3.9/doctest.py", line 1336, in __run
exec(compile(example.source, filename, "single",
File "<doctest nipy.modalities.fmri.utils.convolve_functions[2]>", line 1, in <module>
f1 = (t > 0) * (t < 1)
TypeError: unsupported operand type(s) for *: 'StrictGreaterThan' and 'StrictLessThan'
----------------------------------------------------------------------
File "/build/nipy-0.4.3~rc1/.pybuild/cpython3_3.9_nipy/build/nipy/modalities/fmri/utils.py", line 538, in nipy.modalities.fmri.utils.convolve_functions
Failed example:
tri = convolve_functions(f1, f1, [0, 2], [0, 2], 1.0e-3, name='conv')
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python3.9/doctest.py", line 1336, in __run
exec(compile(example.source, filename, "single",
File "<doctest nipy.modalities.fmri.utils.convolve_functions[3]>", line 1, in <module>
tri = convolve_functions(f1, f1, [0, 2], [0, 2], 1.0e-3, name='conv')
NameError: name 'f1' is not defined
----------------------------------------------------------------------
...
----------------------------------------------------------------------
File "/build/nipy-0.4.3~rc1/.pybuild/cpython3_3.9_nipy/build/nipy/modalities/fmri/utils.py", line 549, in nipy.modalities.fmri.utils.convolve_functions
Failed example:
y = ftri(x)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python3.9/doctest.py", line 1336, in __run
exec(compile(example.source, filename, "single",
File "<doctest nipy.modalities.fmri.utils.convolve_functions[7]>", line 1, in <module>
y = ftri(x)
NameError: name 'ftri' is not defined
----------------------------------------------------------------------
File "/build/nipy-0.4.3~rc1/.pybuild/cpython3_3.9_nipy/build/nipy/modalities/fmri/utils.py", line 552, in nipy.modalities.fmri.utils.convolve_functions
Failed example:
x[np.argmax(y)]
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python3.9/doctest.py", line 1336, in __run
exec(compile(example.source, filename, "single",
File "<doctest nipy.modalities.fmri.utils.convolve_functions[8]>", line 1, in <module>
x[np.argmax(y)]
NameError: name 'y' is not defined
----------------------------------------------------------------------
Ran 4508 tests in 172.252s
FAILED (SKIP=6, errors=9, failures=1)
Any idea how to fix this?
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/nipy
--
http://fam-tille.de
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