debian-med May 2020 by author

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atzlinux 肖盛文

Re: rtax_0.984-7_source.changes ACCEPTED into unstable May 16
Re: rtax_0.984-7_source.changes ACCEPTED into unstable May 16

Étienne Mollier

Re: RFS paml - fixed #957659 May 10
Re: RFS paml - fixed #957659 May 11
Re: Pushing verbose mode May 14
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 26
RFS paml - fixed #957659 May 08
Re: Statistics::PCA and friends May 26
Re: my plans about deep learning framework May 07
Re: Perl issues with ensembl-vep May 28
Re: RFS paml - fixed #957659 May 09
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 19
Re: Sponsored and hints for more targets (Was: RFS pynn: fixed failing autodep8 autopkgtest (#959061)) May 28
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 26
Re: VirusSeeker: RepeatMasker missed in dependencies May 08
Re: Statistics::PCA and friends May 23
Re: RFS tigr-glimmer: reinforced `make` error checking May 12
Re: Statistics::PCA and friends May 27
Tandem Repeats Finder License Terms May 08
VirusSeeker: RepeatMasker missed in dependencies (Was: VirusSeeker - sorting the Downloads section) May 07
Re: Statistics::PCA and friends May 21
RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 16
Re: Bug#961619: ITP: libmath-cephes-perl -- perl interface to the math cephes library May 26
Re: Statistics::PCA and friends May 23
Re: Statistics::PCA and friends May 20
Re: RFS paml - fixed #957659 May 09
RFS tigr-glimmer: reinforced `make` error checking May 11
Re: RFS paml - fixed #957659 May 09
Re: VirusSeeker: RepeatMasker missed in dependencies (Was: VirusSeeker - sorting the Downloads section) May 08
Bug#961677: ITP: libstatistics-pca-perl -- perl module for principal component analysis (PCA) May 27
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 16
RFS pynn: fixed failing autodep8 autopkgtest (#959061) May 27
Re: Tandem Repeats Finder License Terms May 10
Re: Fwd: routine-update, wnpp-check and tasks May 16
Statistics::PCA and friends May 19
Re: routine-update, wnpp-check and tasks May 02
Re: Pushing verbose mode May 13
Re: routine-update, wnpp-check and tasks May 02
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 18
Bug#961619: ITP: libmath-cephes-perl -- perl interface to the math cephes library May 26
Re: VirusSeeker: RepeatMasker missed in dependencies (Was: VirusSeeker - sorting the Downloads section) May 13

Sébastien Jodogne

New package - orthanc-gdcm May 28
Re: New package - orthanc-gdcm May 28
Re: New package - orthanc-gdcm May 28

Steffen Möller

routine-update - epoch handling May 15
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 10
https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/2nd-Covid-19-Hackathon May 23
https://biohackathons.github.io/ - BioHackathons Paper May 11
sonLib - anyone working with it, addressed packaging?!? May 22
RFH: pigx-rnaseq - extra eyes requested to fix tests May 05
Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas May 26
ksw2 library - nobody else at it, right? May 14
Re: Please do not hide clearly bioinformatics related stuff in language teams (Was: Bug#961730: ITP: presto -- REpertoire Sequencing TOolkit) May 28
Infrastructure for next Covid-19 Sprint May 23
Re: Please help with Conda packaging [Was: Bug#926416: ITP: conda -- OS-agnostic, system-level binary package manager and ecosystem] May 23
Re: Welcoming GSoC students May 05
Re: ksw2 library - nobody else at it, right? May 15
pyxb removal and rev dependency on pbcore - anybody caring? May 18
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 12

Aaron M. Ucko

Re: RFS: ncbi-entrez-direct May 07
Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas May 07
Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree? May 07
Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas May 26
Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas May 07
Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas May 11

Andreas Tille

Re: Maven packages in Debian (was Re: Progress in preparing the Bazel Build System for Debian (COVID-19 Biohackathon follow-up)) May 13
Re: Pushing verbose mode May 14
Re: RFS: paml May 29
Re: [RFS] abacas May 28
Re: RFS: cgview May 10
Re: raxml-ng dependency not already packaged May 31
Re: Packaging libsis-jhdf5-java -- help needed May 08
Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas May 26
Re: Packaging libsis-jhdf5-java -- help needed May 07
Re: Maintaining non-med packages in the team only to satisfy dependencies May 30
Re: [RFS] freecontact May 14
Re: rtax_0.984-7_source.changes ACCEPTED into unstable May 16
Re: VirusSeeker: RepeatMasker missed in dependencies (Was: VirusSeeker - sorting the Downloads section) May 07
Re: gbp related issues with importing new upstream release for raxml-ng May 26
Re: Packaging libsis-jhdf5-java -- help needed May 07
Re: New package - orthanc-gdcm May 28
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 26
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 11
Bug#961158: ITP: distlib -- Java library of statistical distribution functions May 21
Re: RFS tigr-glimmer: reinforced `make` error checking May 12
Re: Tandem Repeats Finder License Terms May 30
Re: RFS: libsmithwaterman May 22
Re: Progress in preparing the Bazel Build System for Debian (COVID-19 Biohackathon follow-up) May 06
Re: Help for asking upstreams about free licenses urgently needed (Was: Help: Seeking source code of guppy base caller) May 03
Re: Statistics::PCA and friends May 21
Re: VirusSeeker: RepeatMasker missed in dependencies (Was: VirusSeeker - sorting the Downloads section) May 08
Re: Packaging libsis-jhdf5-java -- help needed May 08
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 19
Re: VirusSeeker: RepeatMasker missed in dependencies May 08
Re: https://biohackathons.github.io/ - BioHackathons Paper May 11
Re: RFS: gasic May 13
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 11
Re: RFS: parsnp May 07
Re: RFS paml - fixed #957659 May 09
Re: ksw2 library - nobody else at it, right? May 14
Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas May 07
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 11
Re: Help for asking upstreams about free licenses urgently needed (Was: Help: Seeking source code of guppy base caller) May 05
Re: Videoconference on Friday 2020-05-01 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020))) May 14
Re: Tandem Repeats Finder License Terms May 10
Re: Help for asking upstreams about free licenses urgently needed (Was: Help: Seeking source code of guppy base caller) May 05
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 11
routine-update, wnpp-check and tasks (Was: poa: fix ftbfs with gcc-10) May 02
Re: ksw2 library - nobody else at it, right? May 14
Re: loki2.4.x for binary traits May 25
Re: raxml-ng dependency not already packaged May 29
Videoconference today Friday 2020-05-29 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020))) May 29
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 12
Re: RFS: ncbi-entrez-direct May 06
Re: [RFS] abacas May 28
Perl issues with ensembl-vep (Was: Sponsored and hints for more targets) May 28
Re: Pushing verbose mode May 14
Re: RFS: Tree-puzzle tests updated May 14
Re: gbp related issues with importing new upstream release for raxml-ng May 26
Re: Packaging libsis-jhdf5-java -- help needed May 13
Re: Tandem Repeats Finder License Terms May 08
Re: RFS: fitgcp May 12
Re: Statistics::PCA and friends May 23
Re: Help for asking upstreams about free licenses urgently needed (Was: Help: Seeking source code of guppy base caller) May 05
Re: New package - orthanc-gdcm May 28
Sponsored and hints for more targets (Was: RFS pynn: fixed failing autodep8 autopkgtest (#959061)) May 28
Re: picard-tools upgrade May 29
Please do not hide clearly bioinformatics related stuff in language teams (Was: Bug#961730: ITP: presto -- REpertoire Sequencing TOolkit) May 28
Re: RFS: transrate-tools May 25
Re: RFS paml - fixed #957659 May 10
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 16
Re: Bug#961619: ITP: libmath-cephes-perl -- perl interface to the math cephes library May 26
Re: Videoconference on Friday 2020-05-22 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020))) May 22
Re: RFS: cgview May 09
tiddit is using patched BamTools - do we want to incorporate this patch? May 25
Welcoming GSoC students May 05
Re: RFS: gasic May 13
Re: RFS: gasic May 10
Re: RFS paml - fixed #957659 May 09
Re: [RFS] opensurgsim May 25
Re: New package - orthanc-gdcm May 28
Re: ksw2 library - nobody else at it, right? May 15
Re: routine-update - epoch handling May 15
Re: RFS : libdistlib-java May 25
umap, vep and guppy (Was: Idea wanted: What is the most key open source projects to fight COVID-19?) May 25

Andrej Shadura

Re: Progress in preparing the Bazel Build System for Debian (COVID-19 Biohackathon follow-up) May 06

Andrius Merkys

Re: gbp related issues with importing new upstream release for raxml-ng May 26
Re: gbp related issues with importing new upstream release for raxml-ng May 26
Re: gbp related issues with importing new upstream release for raxml-ng May 26
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 16

Charles Plessy

Debian Bug Tracking System

Processed: Re: Bug#961158: ITP: distlib -- Java library of statistical distribution functions May 21

Emmanuel Bourg

Re: Progress in preparing the Bazel Build System for Debian (COVID-19 Biohackathon follow-up) May 06

gregor herrmann

Re: Statistics::PCA and friends May 22
Re: Statistics::PCA and friends May 27
Re: Statistics::PCA and friends May 20
Re: Statistics::PCA and friends May 23
Re: Statistics::PCA and friends May 23
Re: Statistics::PCA and friends May 23

Jonas Smedegaard

Re: Statistics::PCA and friends May 23

Julien Yann Dutheil

Re: RFS paml - fixed #957659 May 09
Re: RFS paml - fixed #957659 May 11

Jun Aruga

Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 09
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 12
deb packages using simde but the upstream PR not sent? May 18
Re: Help for asking upstreams about free licenses urgently needed (Was: Help: Seeking source code of guppy base caller) May 03
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 11
Re: deb packages using simde but the upstream PR not sent? May 18
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 11
Re: https://biohackathons.github.io/ - BioHackathons Paper May 11
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 24
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 11

merkys

Re: VirusSeeker: RepeatMasker missed in dependencies (Was: VirusSeeker - sorting the Downloads section) May 14
Re: Statistics::PCA and friends May 27
Re: VirusSeeker: RepeatMasker missed in dependencies (Was: VirusSeeker - sorting the Downloads section) May 13
Re: Sponsored and hints for more targets (Was: RFS pynn: fixed failing autodep8 autopkgtest (#959061)) May 29
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 19
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 27
Re: Idea wanted: What is the most key open source projects to fight COVID-19? May 11
Re: [covid-19] Gradle help for nextflow needed May 01
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 19
Re: RFS: prinseq-lite: added dependencies to fix autopkgtest failures May 20

Michael Crusoe

Re: deb packages using simde but the upstream PR not sent? May 18
Re: SIMDe use in Debian's MMseqs2 May 08
Re: RFS paml - fixed #957659 May 09
Re: SIMDe use in Debian's MMseqs2 May 09
Re: staden-io-lib_1.14.12-1_source.changes ACCEPTED into unstable May 21
Re: sonLib - anyone working with it, addressed packaging?!? May 22

Mo Zhou

Re: license problem about nvidia's neural network library (cuDNN) May 07
my plans about deep learning framework May 07
license problem about nvidia's neural network library (cuDNN) May 07

Nilesh Patra

[RFS] abacas May 28
[RFS] codonw May 15
Re: Welcoming GSoC students May 05
Re: Infrastructure for next Covid-19 Sprint May 23
[RFS] freecontact May 14
[RFS] opensurgsim May 25
Re: [RFS] abacas May 28
Re: RFS: cgview May 09

Olek Wojnar

Re: Welcoming GSoC students May 16
Progress in preparing the Bazel Build System for Debian (COVID-19 Biohackathon follow-up) May 06
Fwd: routine-update, wnpp-check and tasks May 16
Re: Fwd: routine-update, wnpp-check and tasks May 16
Re: Progress in preparing the Bazel Build System for Debian (COVID-19 Biohackathon follow-up) May 06
Re: Progress in preparing the Bazel Build System for Debian (COVID-19 Biohackathon follow-up) May 06

olivier sallou

picard-tools upgrade May 29

Pierre Gruet

Re: Maintaining non-med packages in the team only to satisfy dependencies May 30
Maintaining non-med packages in the team only to satisfy dependencies May 29
Re: Packaging libsis-jhdf5-java -- help needed May 08
Re: RFS : libdistlib-java May 26
RFS : libdistlib-java May 25
Re: Packaging libsis-jhdf5-java -- help needed May 01
Bug#961158: ITP: distlib -- Java library of statistical distribution functions May 20
Re: Packaging libsis-jhdf5-java -- help needed May 07
Bug#961158: ITP: distlib -- Java library of statistical distribution functions May 21
Re: Packaging libsis-jhdf5-java -- help needed May 07
Re: Packaging libsis-jhdf5-java -- help needed May 07
Re: Packaging libsis-jhdf5-java -- help needed May 12
Re: Packaging libsis-jhdf5-java -- help needed May 09

Pranav Ballaney

Re: RFS: gasic May 12
RFS: paml May 29
RFS: libsmithwaterman May 22
Re: RFS: gasic May 13
RFS: cgview May 09
RFS: ncbi-entrez-direct May 06
Re: RFS: parsnp May 08
RFS: fitgcp May 11
Re: loki2.4.x for binary traits May 25
RFS: parsnp May 07
RFS: freebayes May 31
Re: Welcoming GSoC students May 05
Re: RFS: transrate-tools May 25
Re: RFS: cgview May 09
Patch to avoid segfault in kallisto May 15
RFS: Tree-puzzle tests updated May 13
RFS: gasic May 09
RFS: transrate-tools May 24
RFS: bandage May 29
RFS: hunspell-en-med May 03

Rebecca N. Palmer

Re: license problem about nvidia's neural network library (cuDNN) May 07
don't copy from there Re: conda May 24

Sascha Steinbiss

Re: [RFS] codonw May 15
Re: [RFS] codonw May 16

Scott Kitterman

Bug#961158: ITP: distlib -- Java library of statistical distribution functions May 20
Bug#961158: ITP: distlib -- Java library of statistical distribution functions May 21

Shayan Doust

raxml-ng dependency not already packaged May 29
Re: raxml-ng dependency not already packaged May 31
gbp related issues with importing new upstream release for raxml-ng May 26
Re: gbp related issues with importing new upstream release for raxml-ng May 26

Sudip Mukherjee

Thorsten Glaser

Tony Travis

Wouter van Rheenen

loki2.4.x for binary traits May 25

zimoun

Re: Help for asking upstreams about free licenses urgently needed (Was: Help: Seeking source code of guppy base caller) May 05

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